Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttattgcttggtaggaacaattactcttcaatattactttagaatgtcacaactataactgctacatttgctcatatgtgtttgaaaatgtttgtgcagCTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTCTTTTGACTCCAGCGTTTGGTCGAGCCACATTTTATACTGAAAGGTGCTC

Basic information

species Zea mays
transcript GRMZM2G102021_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G102021_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os02g17280.1 (Oryza sativa), 3'ss of exon 3
----------cttattgcttggtaggaacaattactcttcaatattactttagaatgtcacaactataactgctacatttgctcatatgtgtttgaaaatgtttgtgcagCTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTCTTTTGACTCCAGCGTTTGGTCGAGCCACATTTTATACTGAAAGGTGCTC
          ||||||| || ||  || |  ||   ||||| ||| ||| ||       | ||  ||||||||||       |  | ||   ||  |||||| | |||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||| || ||  |||| |||||||||  ||||| ||||||
tgtgcattcacttattggttagtgtgagcgtttgtccttca-tatcactgtaagtca--aaaatgataactgcta-------ttgtttgaactttgaaatgtctttgcagCTGGTGGTTTAGGCCATGGAGTGGCTCATGCCGTCTTTTTCTGCCTCAGCCTTTTAACTCCAGCATTCGGCAGAGCTACATTTTATGTTGAAAAGTGCTC

upper sequence: GRMZM2G102021_T01 (Zea mays), 3'ss of exon 4
lower sequence: AT2G31440.1 (Arabidopsis thaliana), 3'ss of exon 4
cttattgcttggtaggaacaattactcttcaatattactttagaatgtcacaactataactgctacatttgctcatatgtgtttgaaaatgtttgt--gcagCTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTCTTTTGACTCCAGCGTTTGGTCGAGCCACATTTTATACTGAAAGGTGCTC
  |    ||     |||||    |  |  |       || |      || |   | | |||  |  |  || ||  |     ||  |     |||   ||||||||||||||||| ||||| ||||| ||||| || || || ||| | || || || |||||||||||||||| ||||||||| |||   ||||| || ||
--tgaaactaatatggaacctagaacccacccagcagctgttatgcatcccgtttcttactatttgacatgatctaagactattccagtcaattgcaagcagCTGGTGGTTTAGGTCATGGTGTGGCGCATGCTGTATTCTTTTGTTTGAGCCTCTTAACTCCAGCGTTTGGTCCAGCCACATTCTATGTCGAAAGATGTTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211287765|gb|FL258742.1|FL258742
EST:     AATATCTAAGCCACGTCTTARATTGACTGACAAGATGCTGATTTCTTTAG                         CTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
genomic: AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAGgtaagttttt ... gtttgtgcagCTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
EST: gi|211177671|gb|FL258730.1|FL258730
EST:     AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAG                         CTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
genomic: AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAGgtaagttttt ... gtttgtgcagCTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
EST: gi|50328021|gb|CO523147.1|CO523147
EST:     AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAG                         CTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
genomic: AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAGgtaagttttt ... gtttgtgcagCTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
EST: gi|33285553|gb|CF075348.1|CF075348
EST:     AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAG                         CTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
genomic: AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAGgtaagttttt ... gtttgtgcagCTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
EST: gi|211287769|gb|FL258746.1|FL258746
EST:     AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAG                         CTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
genomic: AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAGgtaagttttt ... gtttgtgcagCTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
EST: gi|211177678|gb|FL258737.1|FL258737
EST:     AATATCCAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAG                         CTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
genomic: AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAGgtaagttttt ... gtttgtgcagCTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
EST: gi|211177677|gb|FL258736.1|FL258736
EST:     AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAG                         CTGGTGGTTTAGGC
genomic: AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAGgtaagttttt ... gtttgtgcagCTGGTGGTTTAGGC
EST: gi|211177679|gb|FL258738.1|FL258738
EST:     AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAG                         CTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCARTC
genomic: AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAGgtaagttttt ... gtttgtgcagCTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
EST: gi|211177680|gb|FL258739.1|FL258739
EST:     AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAG                         CTGGTGGTTTA
genomic: AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAGgtaagttttt ... gtttgtgcagCTGGTGGTTTA
EST: gi|211177673|gb|FL258732.1|FL258732
EST:     AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCYGATTTCTTTAG                         CTGGTGGTTTANGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTC
genomic: AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAGgtaagttttt ... gtttgtgcagCTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTC
EST: gi|211177670|gb|FL258729.1|FL258729
EST:     AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAG                         CTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
genomic: AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAGgtaagttttt ... gtttgtgcagCTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
EST: gi|211072382|gb|FL433877.1|FL433877
EST:     CACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAG                         CTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
genomic: CACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAGgtaagttttt ... gtttgtgcagCTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
EST: gi|211177676|gb|FL258735.1|FL258735
EST:     AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAG                         CTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCMAGT
genomic: AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAGgtaagttttt ... gtttgtgcagCTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTC-AGT
EST: gi|211177675|gb|FL258734.1|FL258734
EST:     AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGAWTTCTTTAG                         CTGGTGGTTTAGGCCATGGAGTGGCTCATG
genomic: AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAGgtaagttttt ... gtttgtgcagCTGGTGGTTTAGGCCATGGAGTGGCTCATG
EST: gi|211287764|gb|FL258741.1|FL258741
EST:     AATATCTAAGCCACGTCTTAGATTGACTGACMAGATGCTGATTTCTTTAG                         CTGGTGGTTTASGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTC
genomic: AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAGgtaagttttt ... gtttgtgcagCTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTC
EST: gi|22546043|gb|BU098364.1|BU098364
EST:     AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAG                         CTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
genomic: AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAGgtaagttttt ... gtttgtgcagCTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
EST: gi|211287771|gb|FL258748.1|FL258748
EST:     AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAG                         CTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
genomic: AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAGgtaagttttt ... gtttgtgcagCTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
EST: gi|149048871|gb|EE048372.2|EE048372
EST:     AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAG                         CTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
genomic: AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAGgtaagttttt ... gtttgtgcagCTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
EST: gi|87155707|gb|DY400496.1|DY400496
EST:     AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAG                         CTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
genomic: AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAGgtaagttttt ... gtttgtgcagCTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
EST: gi|148946111|gb|EC891405.2|EC891405
EST:     AATATATAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAG                         CTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
genomic: AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAGgtaagttttt ... gtttgtgcagCTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
EST: gi|211105119|gb|FL057785.1|FL057785
EST:     AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAG                         CTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTC
genomic: AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAGgtaagttttt ... gtttgtgcagCTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTC
EST: gi|91876597|gb|EB406554.1|EB406554
EST:     AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAG                         CTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
genomic: AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAGgtaagttttt ... gtttgtgcagCTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
EST: gi|211177674|gb|FL258733.1|FL258733
EST:     AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAG                         CTGGTGGTTTAGGCCATGGAATGGCTCCATGCAGTCTTTTTCTGTCTCAGT
genomic: AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAGgtaagttttt ... gtttgtgcagCTGGTGGTTTAGGCCATGGAGTGGCTC-ATGCAGTCTTTTTCTGTCTCAGT
EST: gi|211287768|gb|FL258745.1|FL258745
EST:     AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAG                         CTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
genomic: AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAGgtaagttttt ... gtttgtgcagCTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
EST: gi|22818908|gb|BU498998.1|BU498998
EST:     AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAG                         CTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
genomic: AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAGgtaagttttt ... gtttgtgcagCTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
EST: gi|113703076|gb|EE680580.1|EE680580
EST:     AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAG                         CTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
genomic: AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAGgtaagttttt ... gtttgtgcagCTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
EST: gi|37395770|gb|CF635168.1|CF635168
EST:     AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAG                         CTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
genomic: AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAGgtaagttttt ... gtttgtgcagCTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
EST: gi|33091816|gb|CF051810.1|CF051810
EST:     AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAG                         CTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
genomic: AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAGgtaagttttt ... gtttgtgcagCTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
EST: gi|87156122|gb|DY400911.1|DY400911
EST:     AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAG                         CTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
genomic: AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAGgtaagttttt ... gtttgtgcagCTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
EST: gi|211287767|gb|FL258744.1|FL258744
EST:     AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAG                         CTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
genomic: AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAGgtaagttttt ... gtttgtgcagCTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
EST: gi|26559868|gb|CA832103.1|CA832103
EST:     AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAG                         CTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
genomic: AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAGgtaagttttt ... gtttgtgcagCTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
EST: gi|211287770|gb|FL258747.1|FL258747
EST:     AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAG                         CTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
genomic: AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAGgtaagttttt ... gtttgtgcagCTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
EST: gi|211177672|gb|FL258731.1|FL258731
EST:     AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAG                         CTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
genomic: AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAGgtaagttttt ... gtttgtgcagCTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
EST: gi|211177681|gb|FL258740.1|FL258740
EST:     AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAG                         CTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
genomic: AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAGgtaagttttt ... gtttgtgcagCTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
EST: gi|211503758|gb|FL479708.1|FL479708
EST:     CACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAG                         CTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
genomic: CACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAGgtaagttttt ... gtttgtgcagCTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
EST: gi|40336955|gb|CK371025.1|CK371025
EST:     AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAG                         CTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
genomic: AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAGgtaagttttt ... gtttgtgcagCTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
EST: gi|148946112|gb|EC891406.2|EC891406
EST:     AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAG                         CTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC
genomic: AATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAGgtaagttttt ... gtttgtgcagCTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 127

GAAAATGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAGgtaagttttt ... gtttgtgcagCTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTCTTTTGACTCCAGCGTTTGGTCGAGCCACATTTTATACTGAAAGGTGCTC


Block sizes: 49 (upstream exon), 41 (downstream exon)
Score: 39

GAAAATGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAGgtaagttttt ... gtttgtgcagCTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTCTTTTGACTCCAGCGTTTGGTCGAGCCACATTTTATACTGAAAGGTGCTC


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 65

GAAAATGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAGgtaagttttt ... gtttgtgcagCTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTCTTTTGACTCCAGCGTTTGGTCGAGCCACATTTTATACTGAAAGGTGCTC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 86

GAAAATGGAAGAGATGCTAGATGCTTTTGCTGATAGAATATCTAAGCCACGTCTTAGATTGACTGACAAGATGCTGATTTCTTTAGgtaagttttt ... gtttgtgcagCTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTCTTTTGACTCCAGCGTTTGGTCGAGCCACATTTTATACTGAAAGGTGCTC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtcacaactataactgctacatttgctcatatgtgtttgaaaatgtttgtgcagCTGGTGGTTTAGGCCATGGAGTGGCTCATGCAGTCTTTTTCTGTCTCAGTCTTTTGACTCCAGCGTTTGGTCGAGCCACATTTTATACTGAAAGGTGCTC
        ctataac  putative branch site (score: 86)
                                    tttgaaaat  TA-rich tract