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...tctagttcagaagtcatatgaagtcttactccaagtgtttagatttgaatctatttgctttgttgctgggcatacaattgagaatattcaatccgtgcagCCTGAGAAGACAACAGGGACAATCAAGCAGCAGCTAGCTGCTATAGCGCCAACACTTGAGCAGTTGACTAAACAGAAAAATGAAAGAAAAAGAGAGTTTG
species | Zea mays |
transcript | GRMZM2G101874_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AACTTGCTAGGCTTCTTTCTGCTCTCGGAGAAAAAGCTATTGCAAGAACT CCTGAGAAGACCACAGGGACAATCAAGCAGCAGCTAGCTGCTATAGCGCCAEST: gi|148932084|gb|EC875451.2|EC875451
genomic: AACTTGCTAGGCTTCTTTCTGCTCTCGGAGAAAAAGCTATTGCAAGAACTgtaagtagtt ... atccgtgcagCCTGAGAAGACAACAGGGACAATCAAGCAGCAGCTAGCTGCTATAGCGCCA
EST: AACTTGCTAGGCTTCTTTCTGCTCTCGGAGAAAAAGCTATTGCAAGAACT CCTGAGAAGACAACAGGGACAATCAAGCAGCAGCTAGCTGCTATAGCGCCAEST: gi|148946917|gb|EC892199.2|EC892199
genomic: AACTTGCTAGGCTTCTTTCTGCTCTCGGAGAAAAAGCTATTGCAAGAACTgtaagtagtt ... atccgtgcagCCTGAGAAGACAACAGGGACAATCAAGCAGCAGCTAGCTGCTATAGCGCCA
EST: AACTTGCTAGGCTTCTTTCTGCTCTCGGAGAAAAAGCTATTGCAAGAACT CCTGAGAAGACAACAGGGACAATCAAGCAGCAGCTAGCTGCTATAGCGCCAEST: gi|26456561|gb|CA828144.1|CA828144
genomic: AACTTGCTAGGCTTCTTTCTGCTCTCGGAGAAAAAGCTATTGCAAGAACTgtaagtagtt ... atccgtgcagCCTGAGAAGACAACAGGGACAATCAAGCAGCAGCTAGCTGCTATAGCGCCA
EST: AACTTGCTAGGCTTCTTTCTGCTCTCGGAGAAAAAGCTATTGCAAGAACT CCTGAGAAGACAACAGGGACAATCAAGCAGCAGCTAGCTGCTATAGCGCCAEST: gi|29168001|gb|CB411261.1|CB411261
genomic: AACTTGCTAGGCTTCTTTCTGCTCTCGGAGAAAAAGCTATTGCAAGAACTgtaagtagtt ... atccgtgcagCCTGAGAAGACAACAGGGACAATCAAGCAGCAGCTAGCTGCTATAGCGCCA
EST: AACTTGCTAGGCTTCTTTCTGCTCTCGGAGAAAAAGCTATTGCAAGAACT CCTGAGAAGACAACAGGGACAATCAAGCAGCAGCTAGCTGCTATAGCGCCAEST: gi|149058039|gb|EE156723.2|EE156723
genomic: AACTTGCTAGGCTTCTTTCTGCTCTCGGAGAAAAAGCTATTGCAAGAACTgtaagtagtt ... atccgtgcagCCTGAGAAGACAACAGGGACAATCAAGCAGCAGCTAGCTGCTATAGCGCCA
EST: AACTTGCTAGGCTTCTTTCTGCTCTCGGAGAAAAAGCTATTGCAAGAACT CCTGAGAAGACAACAGGGACAATCAAGCAGCAGCTAGCTGCTATAGCGCCAEST: gi|31558097|gb|CD527309.1|CD527309
genomic: AACTTGCTAGGCTTCTTTCTGCTCTCGGAGAAAAAGCTATTGCAAGAACTgtaagtagtt ... atccgtgcagCCTGAGAAGACAACAGGGACAATCAAGCAGCAGCTAGCTGCTATAGCGCCA
EST: AACTTGCTAGGCTTCTTTCTGCTCTCGGAGAAAAAGCTATTGCAAGAACT CCTGAGAAGACAACAGGGACAATCAAGCAGCAGCTAGCTGCTATAGCGCCAEST: gi|30087270|gb|CB885478.1|CB885478
genomic: AACTTGCTAGGCTTCTTTCTGCTCTCGGAGAAAAAGCTATTGCAAGAACTgtaagtagtt ... atccgtgcagCCTGAGAAGACAACAGGGACAATCAAGCAGCAGCTAGCTGCTATAGCGCCA
EST: AACTTGCTAGGCTTCTTTCTGCTCTCGGAGAAAAAGCTATTGCAAGAACT CCTGAGAAGACAACAGGGACAATCAAGCAGCAGCTAGCTGCTATAGCGCCAEST: gi|211137588|gb|FL389534.1|FL389534
genomic: AACTTGCTAGGCTTCTTTCTGCTCTCGGAGAAAAAGCTATTGCAAGAACTgtaagtagtt ... atccgtgcagCCTGAGAAGACAACAGGGACAATCAAGCAGCAGCTAGCTGCTATAGCGCCA
EST: AACTTCCTAGGCCTCTTTCTGCTCTCGGAGAAAAAGCTATTGCAAGAACT CCTAAGAAGACAACAGGGACAATCAAGCAGCAGCTAGCTGCTATAGCGCCAEST: gi|211262089|gb|FL418798.1|FL418798
genomic: AACTTGCTAGGCTTCTTTCTGCTCTCGGAGAAAAAGCTATTGCAAGAACTgtaagtagtt ... atccgtgcagCCTGAGAAGACAACAGGGACAATCAAGCAGCAGCTAGCTGCTATAGCGCCA
EST: AACTTGCTAGGCTTCTTTCTGCTCTCGGAGAAAAAGCTATTGCAAGAACT CCTGAGAAGACAACAGGGACAATCAAGCAGCAGCTAGCTGCTATAGCGCCAEST: gi|211374013|gb|FL281466.1|FL281466
genomic: AACTTGCTAGGCTTCTTTCTGCTCTCGGAGAAAAAGCTATTGCAAGAACTgtaagtagtt ... atccgtgcagCCTGAGAAGACAACAGGGACAATCAAGCAGCAGCTAGCTGCTATAGCGCCA
EST: AACTTGCTAGGCTTCTTTCTGCTCTCGGAGAAAAAGCTATTGCAAGAACT CCTGAGAAGACAACAGGGACAATCAEST: gi|211511641|gb|FL407272.1|FL407272
genomic: AACTTGCTAGGCTTCTTTCTGCTCTCGGAGAAAAAGCTATTGCAAGAACTgtaagtagtt ... atccgtgcagCCTGAGAAGACAACAGGGACAATCA
EST: AACTTGCTAGGCTTCTTTCTGCTCTCGGAGAAAAAGCTATTGCAAGAACT CCTGAGAAGACAACAGGGACAATCAAGCAGCAGCTAGCTGCTATAGCGCCAEST: gi|211189068|gb|FL364427.1|FL364427
genomic: AACTTGCTAGGCTTCTTTCTGCTCTCGGAGAAAAAGCTATTGCAAGAACTgtaagtagtt ... atccgtgcagCCTGAGAAGACAACAGGGACAATCAAGCAGCAGCTAGCTGCTATAGCGCCA
EST: AACTTGCTAGGCTTCTTTCTGCTCTCGGAGAAAAAGCTATTGCAAGAACT CCTGAGAAGACAACAGGGACAATCAAGCAGCAGCTAGCTGCTATAGCGCCAEST: gi|211291088|gb|FL325931.1|FL325931
genomic: AACTTGCTAGGCTTCTTTCTGCTCTCGGAGAAAAAGCTATTGCAAGAACTgtaagtagtt ... atccgtgcagCCTGAGAAGACAACAGGGACAATCAAGCAGCAGCTAGCTGCTATAGCGCCA
EST: AACTTGCTAGGCTTCTTTCTGCTCTCGGAGAAAAAGCTATTGCAAGAACT CCTGAGAAGACAACAGGGGACAATCAAGCAGCAGCTAGCTGCTATAGCGCCEST: gi|211121781|gb|FL425238.1|FL425238
genomic: AACTTGCTAGGCTTCTTTCTGCTCTCGGAGAAAAAGCTATTGCAAGAACTgtaagtagtt ... atccgtgcagCCTGAGAAGACAACAGGG-ACAATCAAGCAGCAGCTAGCTGCTATAGCGCC
EST: AACTTGCTAGGCTTCTTTCTGCTCTCGGAGAAAAAGCTATTGCAAGAACT CCTGAGAAAGACA-CAGGGACAATCAAGCAGCAGCTAGCTGCTATAGCGCCEST: gi|211197583|gb|FL428825.1|FL428825
genomic: AACTTGCTAGGCTTCTTTCTGCTCTCGGAGAAAAAGCTATTGCAAGAACTgtaagtagtt ... atccgtgcagCCTGAGAA-GACAACAGGGACAATCAAGCAGCAGCTAGCTGCTATAGCGCC
EST: AACTTGCTAGGCTTCTTTCTGCTCTCGGAGAANAAGCTATTGCAAGAACT CCTGAGAAGACAACAGGGACAATCAAGCAGCAGCTAGCTGCTATAGCGCCAEST: gi|211194870|gb|FL416650.1|FL416650
genomic: AACTTGCTAGGCTTCTTTCTGCTCTCGGAGAAAAAGCTATTGCAAGAACTgtaagtagtt ... atccgtgcagCCTGAGAAGACAACAGGGACAATCAAGCAGCAGCTAGCTGCTATAGCGCCA
EST: AACTTCCTAGGCTTCTTTCTGCTCTCAGAGAAAAAGCTATTGCAAGAACT CCTGAGAAGACAACAGGGACAATCAAGCAGCAGCTAGCTGCTATAGCGCCAEST: gi|211211707|gb|FL374153.1|FL374153
genomic: AACTTGCTAGGCTTCTTTCTGCTCTCGGAGAAAAAGCTATTGCAAGAACTgtaagtagtt ... atccgtgcagCCTGAGAAGACAACAGGGACAATCAAGCAGCAGCTAGCTGCTATAGCGCCA
EST: AACTTGCTAGGCTTCTTTCTGCTCTCGGAGAAAAAGCTATTGCAAGAACT CCCTGAGA-GACAACAGGGACAATCAAGCA-CAGCTEST: gi|211353641|gb|FL411984.1|FL411984
genomic: AACTTGCTAGGCTTCTTTCTGCTCTCGGAGAAAAAGCTATTGCAAGAACTgtaagtagtt ... atccgtgcagCC-TGAGAAGACAACAGGGACAATCAAGCAGCAGCT
EST: AACTTGCTAGGCTTCTTTCTGCTCTCGGAGAAAAAGCTATTGCAAGAACT CCTGAGAAGACAACAGGGACAATCAAGCAGCAGCTAGCTGCTATAGCGCCAEST: gi|91875287|gb|EB405244.1|EB405244
genomic: AACTTGCTAGGCTTCTTTCTGCTCTCGGAGAAAAAGCTATTGCAAGAACTgtaagtagtt ... atccgtgcagCCTGAGAAGACAACAGGGACAATCAAGCAGCAGCTAGCTGCTATAGCGCCA
EST: AACTTGCTAGGCTTCTTTCTGCTCTCGGAGAAAAAGCTATTGCAAGAACT CCTGAGAAGACAACAGGGACAATCAAGCAGCAGCTAGCTGCTATAGCGCCA
genomic: AACTTGCTAGGCTTCTTTCTGCTCTCGGAGAAAAAGCTATTGCAAGAACTgtaagtagtt ... atccgtgcagCCTGAGAAGACAACAGGGACAATCAAGCAGCAGCTAGCTGCTATAGCGCCA
tgaatctatttgctttgttgctgggcatacaattgagaatattcaatccgtgcagCCTGAGAAGACAACAGGGACAATCAAGCAGCAGCTAGCTGCTATAGCGCCAACACTTGAGCAGTTGACTAAACAGAAAAATGAAAGAAAAAGAGAGTTTG
aatattcaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctagttcagaagtcatatgaagtcttactccaagtgtttagatttgaatctatttgctttgttgctgggcatacaattgagaatattcaatccgtgcagCCTGAGAAGACAACAGGGACAATCAAGCAGCAGCTAGCTGCTATAGCGCCAACACTTGAGCAGTTGACTAAACAGAAAAATGAAAGAAAAAGAGAGTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - ccaagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcataca