1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatgtgaccataacttcctgttttttggtgtctttggtgcttctatatattttgtttcctcaactgtaaaacttgagtttggtcttaccctatagGAATGTTAAAACAAGCCCTGGAGTTCAACTGGCATATGCTCCTGGAGGATATTGGCCTTTGGATACCAGATGAAGTCACACATACTGTACATGATGATAA
species | Zea mays |
transcript | GRMZM2G101412_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCATCCACTCGGAATCAATNCA-GTTTGGACTTATCTAGTGAGGAAACCA GAATGTTAAA-CAAGCCCTGGAGTTCAACTGGCATATGCTCCTGGAGGATAEST: gi|93281054|gb|EB673318.1|EB673318
genomic: GCATCCACTCGGAATCAAT-CAAGTTTGGACTTATCTAGTGAGGAAACCAgtatgtgacc ... taccctatagGAATGTTAAAACAAGCCCTGGAGTTCAACTGGCATATGCTCCTGGAGGATA
EST: GCATCCACTCGGAAATCAATCA-GTTTGGACTTATCTAGTGAGGAAACCA GAATGTTAAAACAAGCCCTGGAGTTCAACTGGCATATGCTCCTGGAGGATAEST: gi|76015302|gb|DT942472.1|DT942472
genomic: GCATCCACTCGGAA-TCAATCAAGTTTGGACTTATCTAGTGAGGAAACCAgtatgtgacc ... taccctatagGAATGTTAAAACAAGCCCTGGAGTTCAACTGGCATATGCTCCTGGAGGATA
EST: GCATCCACTCGGAATCAATNCA-GTTTGGACTTATCTAGTGAGGAAACCA GAATGTTAAAACAAGCCCTGGAGTTCAACTGGCATATGCTCCTGGAGGATAEST: gi|78091707|gb|DV520081.1|DV520081
genomic: GCATCCACTCGGAATCAAT-CAAGTTTGGACTTATCTAGTGAGGAAACCAgtatgtgacc ... taccctatagGAATGTTAAAACAAGCCCTGGAGTTCAACTGGCATATGCTCCTGGAGGATA
EST: TGCATCCACTCGGAATCAATCAAGTTTGGACTTATCTAGTGAGGAAACCA GAATGTTAAAACAAGCCCTGGAGTTTCA-CTGGCATATGCTCCTGGGAG-AEST: gi|76922300|gb|DV168931.1|DV168931
genomic: TGCATCCACTCGGAATCAATCAAGTTTGGACTTATCTAGTGAGGAAACCAgtatgtgacc ... taccctatagGAATGTTAAAACAAGCCCTGGAGTT-CAACTGGCATATGCTCCTGG-AGGA
EST: TGCATCCACTCGGAATCAATCAAGTTTGGACTTATCTAGTGAGGAAACCA GAATGTTAAAACAAGCCCTGGAGTTCAACTGGCATATGCTCCTGGAGG
genomic: TGCATCCACTCGGAATCAATCAAGTTTGGACTTATCTAGTGAGGAAACCAgtatgtgacc ... taccctatagGAATGTTAAAACAAGCCCTGGAGTTCAACTGGCATATGCTCCTGGAGG
ttctatatattttgtttcctcaactgtaaaacttgagtttggtcttaccctatagGAATGTTAAAACAAGCCCTGGAGTTCAACTGGCATATGCTCCTGGAGGATATTGGCCTTTGGATACCAGATGAAGTCACACATACTGTACATGATGATAA
gtcttac putative branch site (score: 115)
tcttaccct CT-rich tract
tatattttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgaccataacttcctgttttttggtgtctttggtgcttctatatattttgtttcctcaactgtaaaacttgagtttggtcttaccctatagGAATGTTAAAACAAGCCCTGGAGTTCAACTGGCATATGCTCCTGGAGGATATTGGCCTTTGGATACCAGATGAAGTCACACATACTGTACATGATGATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG