1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgtcccttccccagaccccatgtcggagcctctggcactgtgtctgcccttttcttatgtgatctggtagcaatttttaattggtatgactttggtacagGAAACAGTATGAAAAGCTGAGGAGGCAGTGCCAACAAATTCTGAATGGCTACAAGGGAAATGGGTTGAAGGCAATAACTGAACTTAATAGTGATGAGTGT
species | Zea mays |
transcript | GRMZM2G087144_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GATTTGAATAGCTCTGAAGAGGAAAGGAACTCTATCAAGATCAAGAAAAG GAAACAGTATGAAAAGCTGAGGAGGCAGTGCCAACAAATTCTGAATGGCTAEST: gi|50325323|gb|CO520449.1|CO520449
genomic: GATTTGAATAGCTCTGAAGAGGAAAGGAACTCTATCAAGATCAAGAAAAGgtaatatatt ... tttggtacagGAAACAGTATGAAAAGCTGAGGAGGCAGTGCCAACAAATTCTGAATGGCTA
EST: GATTTGAATAGCTCTGAAGAGGAAAGGAACTCTATCAAGATCAAGAAAAG GAAACAGTATGAAAAGCTGAGGAGGCAGTGCCAACAAATTCTGAATGGCTAEST: gi|148959376|gb|EC905424.2|EC905424
genomic: GATTTGAATAGCTCTGAAGAGGAAAGGAACTCTATCAAGATCAAGAAAAGgtaatatatt ... tttggtacagGAAACAGTATGAAAAGCTGAGGAGGCAGTGCCAACAAATTCTGAATGGCTA
EST: GATTTGAATAGCTCTGAAGAGGAAAGGAACTCTATCAAGATCAAGAAAAG GAAACAGTATGAAAAGCTGAGGAGGCAGTGCCAACAAATTCTGAATGGCTAEST: gi|211240371|gb|FL028807.1|FL028807
genomic: GATTTGAATAGCTCTGAAGAGGAAAGGAACTCTATCAAGATCAAGAAAAGgtaatatatt ... tttggtacagGAAACAGTATGAAAAGCTGAGGAGGCAGTGCCAACAAATTCTGAATGGCTA
EST: GATTTGAATAGCTCTGAAGAGGAAAGGAACTCTATCAAGATCAAGAAAAG GAAACAGTATGAAAAGCTGAGGAGGCAGTGCCAACAAATTCTGAATGGCTAEST: gi|148964953|gb|EE015802.2|EE015802
genomic: GATTTGAATAGCTCTGAAGAGGAAAGGAACTCTATCAAGATCAAGAAAAGgtaatatatt ... tttggtacagGAAACAGTATGAAAAGCTGAGGAGGCAGTGCCAACAAATTCTGAATGGCTA
EST: GATTTGAATAGCTCTGAAGAGGAAAGGAACTCTATCAAGATCAAGAAAAG GAAACAGTATGAAAAGCTGAGGAGGCAGTGCCAACAAATTCTGAATGGCTAEST: gi|211240372|gb|FL028808.1|FL028808
genomic: GATTTGAATAGCTCTGAAGAGGAAAGGAACTCTATCAAGATCAAGAAAAGgtaatatatt ... tttggtacagGAAACAGTATGAAAAGCTGAGGAGGCAGTGCCAACAAATTCTGAATGGCTA
EST: GATTTGAATAGCTCTGAAGAGGAAAGGAACTCTATCAAGATCAAGAAAAG GAAACAGTATGAAAAGCTGAGGAGGCAGTGCCAACAAATTCTGAATGGCTAEST: gi|149106092|gb|EE291756.2|EE291756
genomic: GATTTGAATAGCTCTGAAGAGGAAAGGAACTCTATCAAGATCAAGAAAAGgtaatatatt ... tttggtacagGAAACAGTATGAAAAGCTGAGGAGGCAGTGCCAACAAATTCTGAATGGCTA
EST: GATTTGAATAGCTCTGAAGAGGAAAGGAACTCTATCAAGATCAAGAAAAG GAAACAGTATGAAAAGCTGAGGAGGCAGTGCCAACAAATTCTGAATGGCTAEST: gi|148939166|gb|EC883612.2|EC883612
genomic: GATTTGAATAGCTCTGAAGAGGAAAGGAACTCTATCAAGATCAAGAAAAGgtaatatatt ... tttggtacagGAAACAGTATGAAAAGCTGAGGAGGCAGTGCCAACAAATTCTGAATGGCTA
EST: GATTTGAATAGCTCTGAAGAGGAAAGGAACTCTATCAAGATCAAGAAAAG GAAACAGTATGAAAAGCTGAGGAGGCAGTGCCAACAAATTCTGAATGGCTA
genomic: GATTTGAATAGCTCTGAAGAGGAAAGGAACTCTATCAAGATCAAGAAAAGgtaatatatt ... tttggtacagGAAACAGTATGAAAAGCTGAGGAGGCAGTGCCAACAAATTCTGAATGGCTA
gcccttttcttatgtgatctggtagcaatttttaattggtatgactttggtacagGAAACAGTATGAAAAGCTGAGGAGGCAGTGCCAACAAATTCTGAATGGCTACAAGGGAAATGGGTTGAAGGCAATAACTGAACTTAATAGTGATGAGTGT
ttttaat putative branch site (score: 3)
aatttttaattggtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtcccttccccagaccccatgtcggagcctctggcactgtgtctgcccttttcttatgtgatctggtagcaatttttaattggtatgactttggtacagGAAACAGTATGAAAAGCTGAGGAGGCAGTGCCAACAAATTCTGAATGGCTACAAGGGAAATGGGTTGAAGGCAATAACTGAACTTAATAGTGATGAGTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - -ccatgtc
- - - - - - - - - - - - - -gcctctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatctg