1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgagtgagtttgaactctgtttggatttaatactgttgcctgagaaactctcgtaatcttttaagcccttaaggtgttttatcattccttactttcagGGTAGGGAATGCTTTGCGTGTGCACCTACTGGTTCTGGCAAGACATTGGCTTTCTTGTTTCCACTTCTTATGAAAATTAAG
species | Zea mays |
transcript | GRMZM2G083580_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTCAAGAACCTACACCAATTCAAAGGCAGGCCATGCCCATTCTTCTTTCG GGTAGGGAATGCTTTGCGTGTGCACCTACTGGTTCTGGCAAGACATTGGCTEST: gi|88753711|gb|DY537852.1|DY537852
genomic: TTCAAGAACCTACACCAATTCAAAGGCAGGCCATGCCCATTCTTCTTTCGgtgagtgagt ... ttactttcagGGTAGGGAATGCTTTGCGTGTGCACCTACTGGTTCTGGCAAGACATTGGCT
EST: TTCAAGAACCTACACCAATTCAAAGGCAGGCCATGCCCATTCTTCTTTCG GGTAGGGAATGCTTTGCGTGTGCACCTACTGGTTCTGGCAAGACATTGGCTEST: gi|71299629|gb|DR785823.1|DR785823
genomic: TTCAAGAACCTACACCAATTCAAAGGCAGGCCATGCCCATTCTTCTTTCGgtgagtgagt ... ttactttcagGGTAGGGAATGCTTTGCGTGTGCACCTACTGGTTCTGGCAAGACATTGGCT
EST: TTCAAGAACCTACACCAATTCAAAGGCAGGCCATGCCCATTCTTCTTTCG GGTAGGGAATGCTTTGCGTGTGCACCTACTGGTTCTGGCAAGACATTGGCTEST: gi|86469334|gb|DY235704.1|DY235704
genomic: TTCAAGAACCTACACCAATTCAAAGGCAGGCCATGCCCATTCTTCTTTCGgtgagtgagt ... ttactttcagGGTAGGGAATGCTTTGCGTGTGCACCTACTGGTTCTGGCAAGACATTGGCT
EST: TTCAAGAACCTACACCAATTCAGAGGCAGGCCATGCCCATTCTTCTTTCG GGTAGGGAATGCTTTGCGTGTGCACCTACTGGTTCTGGCAAGEST: gi|88756889|gb|DY541030.1|DY541030
genomic: TTCAAGAACCTACACCAATTCAAAGGCAGGCCATGCCCATTCTTCTTTCGgtgagtgagt ... ttactttcagGGTAGGGAATGCTTTGCGTGTGCACCTACTGGTTCTGGCAAG
EST: TTCAAGAACCTACACCAATTCAAAGGCAGGCCATGCCCATTCTTCTTTCG GGTAGGGAATGCTTTGCGTGTGCACCTACTGGTTCTGGCAAGEST: gi|18964336|gb|BM660947.1|BM660947
genomic: TTCAAGAACCTACACCAATTCAAAGGCAGGCCATGCCCATTCTTCTTTCGgtgagtgagt ... ttactttcagGGTAGGGAATGCTTTGCGTGTGCACCTACTGGTTCTGGCAAG
EST: TTCAAGAACCTACACCAATTCAAAGGCAGGCCATGCCCATTCTTCTTTCG GGTAGGGAATGCTTTGCGTGTGCACCTACTGGTTCTGGCAAGACATTGGCTEST: gi|78115306|gb|DV533694.1|DV533694
genomic: TTCAAGAACCTACACCAATTCAAAGGCAGGCCATGCCCATTCTTCTTTCGgtgagtgagt ... ttactttcagGGTAGGGAATGCTTTGCGTGTGCACCTACTGGTTCTGGCAAGACATTGGCT
EST: TTCAAGAACCTACACCAATTCAAAGGCAGGCCATGCCCATTCTTCTTTCG GGTAGGGAATGCTTTGCGTGTGCACCTACTGGTTCTGGCAAGACATTGGCT
genomic: TTCAAGAACCTACACCAATTCAAAGGCAGGCCATGCCCATTCTTCTTTCGgtgagtgagt ... ttactttcagGGTAGGGAATGCTTTGCGTGTGCACCTACTGGTTCTGGCAAGACATTGGCT
gaaactctcgtaatcttttaagcccttaaggtgttttatcattccttactttcagGGTAGGGAATGCTTTGCGTGTGCACCTACTGGTTCTGGCAAGACATTGGCTTTCTTGTTTCCACTTCTTATGAAAATTAAG
tccttac putative branch site (score: 2)
tcattccttactttc CT-rich tract
taatcttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgagtttgaactctgtttggatttaatactgttgcctgagaaactctcgtaatcttttaagcccttaaggtgttttatcattccttactttcagGGTAGGGAATGCTTTGCGTGTGCACCTACTGGTTCTGGCAAGACATTGGCTTTCTTGTTTCCACTTCTTATGAAAATTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA