1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atacaaaccttttaattaaatcatgactagatcactagaacattttttgtgatttgatactttgccctaaaacttacttttatattatatgtacccttagATCAATAGTCTTATTGGAACCAAGGTGGAGTGGGTTTATCATATGTTACAAGCATTCAACACGGGCAACCTTGCTTTCTACCAAGAACTTTGCAGGGTTC
species | Zea mays |
transcript | GRMZM2G083076_T03 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGCTGGGTGATAACATTTATAATTTTGGAGAGTTATTAGCTCACCCGATT ATCAATAGTCTTATTGGAACCAAGGTGGAGTGGGTTTATCATATGTTACAAEST: gi|12047287|gb|BF729426.1|BF729426
genomic: TGCTGGGTGATAACATTTATAATTTTGGAGAGTTATTAGCTCACCCGATTgtaagtaatt ... gtacccttagATCAATAGTCTTATTGGAACCAAGGTGGAGTGGGTTTATCATATGTTACAA
EST: TGCTGGGTGATAACATTTATAATTTTGGAGAGTTATTAGCTCACCCGATT ATCAATAGTCTTATTGGAACCAAGGTGGAGTGGGTTTATCATATGTTACAAEST: gi|148960655|gb|EE011285.2|EE011285
genomic: TGCTGGGTGATAACATTTATAATTTTGGAGAGTTATTAGCTCACCCGATTgtaagtaatt ... gtacccttagATCAATAGTCTTATTGGAACCAAGGTGGAGTGGGTTTATCATATGTTACAA
EST: GCTGGGTGATAACATTTATAATTTTGGAGAGTTATTAGCTCACCCCGAT- ATCAATAGTCTTATTGGAEST: gi|8401231|gb|BE056865.1|BE056865
genomic: GCTGGGTGATAACATTTATAATTTTGGAGAGTTATTAGCTCACCC-GATTgtaagtaatt ... gtacccttagATCAATAGTCTTATTGGA
EST: TGCTGGGTGATAACATTTATAATTTTGGAGAGTTATTAGCTCACCCGATT ATCAATAGTCTTATTGGAACCAAGGTGGAGTGGGTTTATCATATGTTACAAEST: gi|116829258|gb|EC866181.1|EC866181
genomic: TGCTGGGTGATAACATTTATAATTTTGGAGAGTTATTAGCTCACCCGATTgtaagtaatt ... gtacccttagATCAATAGTCTTATTGGAACCAAGGTGGAGTGGGTTTATCATATGTTACAA
EST: TGCTGGGTGATAACATTTATAATTTTGGAGAGTTATTAGCTCACCCGATT ATCAATAGTCTTATTGGAACCAAGGTGGAGTGGGTTTATCATATGTTACAA
genomic: TGCTGGGTGATAACATTTATAATTTTGGAGAGTTATTAGCTCACCCGATTgtaagtaatt ... gtacccttagATCAATAGTCTTATTGGAACCAAGGTGGAGTGGGTTTATCATATGTTACAA
tttgtgatttgatactttgccctaaaacttacttttatattatatgtacccttagATCAATAGTCTTATTGGAACCAAGGTGGAGTGGGTTTATCATATGTTACAAGCATTCAACACGGGCAACCTTGCTTTCTACCAAGAACTTTGCAGGGTTC
aacttac putative branch site (score: 2)
taccctt putative PPT
taaaacttacttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atacaaaccttttaattaaatcatgactagatcactagaacattttttgtgatttgatactttgccctaaaacttacttttatattatatgtacccttagATCAATAGTCTTATTGGAACCAAGGTGGAGTGGGTTTATCATATGTTACAAGCATTCAACACGGGCAACCTTGCTTTCTACCAAGAACTTTGCAGGGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
atacaaa
- - - - - - - - - - -catgact
- - - - - - - - - - - - - - - - - - - - - - - -tgtgatt