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gtatcgatcagtgaatccccatctgctgcttcactataccccctcttttacactcactgtgaagtacgtcaaccctttgcatctatgcttatttgctttgctattagGATTGGATGCGCTTCAGTGTTGCATTCTGGCACACGTTCCGTGGTACTGGCGCTGATCCTTTCGGTGCTCCTACAAAGACTTGGCCTTGGGAGGACGGCA
species | Zea mays |
transcript | GRMZM2G081682_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTTATAAGTGGTATAACCTGGAGGAAGTGATTCTCGGTAAGAAGATGAAG GATTGGATGCGCTTCAGTGTTGCGTTCTGGCACACGTTCCGCGGTACTGGCEST: gi|211316223|gb|FL334911.1|FL334911
genomic: CTTATAAGTGGTATAACAAGGAGGAAGTGATTCTCGGTAAGAAGATGAAGgtatcgatca ... ttgctattagGATTGGATGCGCTTCAGTGTTGCATTCTGGCACACGTTCCGTGGTACTGGC
EST: CTTATAAGTGGTATAACAAGGAGGAAGTGATTCTCGGTMAGAAGATGAAG GATTGGATGCGCTTCAGTGTTGCGTTCTGGCACACGTTCCGCGGTACTGGCEST: gi|211075605|gb|FL344132.1|FL344132
genomic: CTTATAAGTGGTATAACAAGGAGGAAGTGATTCTCGGTAAGAAGATGAAGgtatcgatca ... ttgctattagGATTGGATGCGCTTCAGTGTTGCATTCTGGCACACGTTCCGTGGTACTGGC
EST: CTTATAAGTGGTATAACAAGGAGGAAGTGATTCTCGGTAAGAAGATGAAG SATTGGATGCGCTTCAGTGTTGCGTTCTGGCACACGTTCCGCGGTACTGGCEST: gi|211288683|gb|FL312634.1|FL312634
genomic: CTTATAAGTGGTATAACAAGGAGGAAGTGATTCTCGGTAAGAAGATGAAGgtatcgatca ... ttgctattagGATTGGATGCGCTTCAGTGTTGCATTCTGGCACACGTTCCGTGGTACTGGC
EST: CTTATAAGTGGTATAACAAGGAGGAAGTGATTCTCGGTAAGAAGATGAAG GATTGGATGCGCTTCAGTGTTGCATTCTGGCACACGTTCCGTGGTACTGGCEST: gi|211328969|gb|FL341564.1|FL341564
genomic: CTTATAAGTGGTATAACAAGGAGGAAGTGATTCTCGGTAAGAAGATGAAGgtatcgatca ... ttgctattagGATTGGATGCGCTTCAGTGTTGCATTCTGGCACACGTTCCGTGGTACTGGC
EST: CTTATAAGTGGTATAACAAGGAGGAAGTGATTCTCGGTAAGAAGATGAAG GATTGGATGCGCTTCAGTGTTGCGTTCTGGCACACGTTCCGSGGTACTGGCEST: gi|71426924|gb|DR807974.1|DR807974
genomic: CTTATAAGTGGTATAACAAGGAGGAAGTGATTCTCGGTAAGAAGATGAAGgtatcgatca ... ttgctattagGATTGGATGCGCTTCAGTGTTGCATTCTGGCACACGTTCCGTGGTACTGGC
EST: CTTATAAGTGGTATAACAAGGAGGAAGTGATTCTCGGTAAGAAGATGAAG GATTGGATGCGCTTCAGTGTTGCATTCTGGCACACGTTCCGTGGTACTGGCEST: gi|211416745|gb|FL321410.1|FL321410
genomic: CTTATAAGTGGTATAACAAGGAGGAAGTGATTCTCGGTAAGAAGATGAAGgtatcgatca ... ttgctattagGATTGGATGCGCTTCAGTGTTGCATTCTGGCACACGTTCCGTGGTACTGGC
EST: CTTATAAGTGGTATAACAAGGAGGAAGTGATTCTCGGTAAGAAGATGAAG GATTGGATGCGCTTCAGTGTTGCGTTCTGGEST: gi|74245361|gb|DT653275.1|DT653275
genomic: CTTATAAGTGGTATAACAAGGAGGAAGTGATTCTCGGTAAGAAGATGAAGgtatcgatca ... ttgctattagGATTGGATGCGCTTCAGTGTTGCATTCTGG
EST: CTTATAAGTGGTATAACAAGGAGGAAGTGATTCTCGGTAAGAAGATGAAG GATTGGATGCGCTTCAGTGTTGCATTCTGGCACACGTTCCGTGGTACTGGCEST: gi|74232804|gb|DT640718.1|DT640718
genomic: CTTATAAGTGGTATAACAAGGAGGAAGTGATTCTCGGTAAGAAGATGAAGgtatcgatca ... ttgctattagGATTGGATGCGCTTCAGTGTTGCATTCTGGCACACGTTCCGTGGTACTGGC
EST: CTTATAAGTGGTATAACAAGGAGGAAGTGATTCTCGGTAAGAAGATGAAG GATTGGATGCGCTTCAGTGTTGCATTCTGGCACACGTTCCGTGGTACTGGCEST: gi|211420503|gb|FL364960.1|FL364960
genomic: CTTATAAGTGGTATAACAAGGAGGAAGTGATTCTCGGTAAGAAGATGAAGgtatcgatca ... ttgctattagGATTGGATGCGCTTCAGTGTTGCATTCTGGCACACGTTCCGTGGTACTGGC
EST: CTTATAAGTGGTATAACAAGGAGGAAGTGATTCTCGGTAAGAAGATGAAG GATTGGATGCGCTTCAGTGTTGCGTTCTGGCACACGTTCCGCGGTACTGGCEST: gi|32866060|gb|CF005742.1|CF005742
genomic: CTTATAAGTGGTATAACAAGGAGGAAGTGATTCTCGGTAAGAAGATGAAGgtatcgatca ... ttgctattagGATTGGATGCGCTTCAGTGTTGCATTCTGGCACACGTTCCGTGGTACTGGC
EST: CTTATAAGTGGTATAACAAGGAGGAAGTGATTCTCGGTAAGAAGATGAAG GATTGGATGCGCTTCAGTGTTGCATTCTGGCACACGTTCEST: gi|32909379|gb|CF014191.1|CF014191
genomic: CTTATAAGTGGTATAACAAGGAGGAAGTGATTCTCGGTAAGAAGATGAAGgtatcgatca ... ttgctattagGATTGGATGCGCTTCAGTGTTGCATTCTGGCACACGTTC
EST: CTTATAAGTGGTATAACAAGGAGGAAGTGATTCTCGGTAAGAAGATGAAG GATTGGATGCGCTTCAGTGTTGCATTCTGGCACACGTTCCGTGGTACTGGCEST: gi|211310239|gb|FL338849.1|FL338849
genomic: CTTATAAGTGGTATAACAAGGAGGAAGTGATTCTCGGTAAGAAGATGAAGgtatcgatca ... ttgctattagGATTGGATGCGCTTCAGTGTTGCATTCTGGCACACGTTCCGTGGTACTGGC
EST: CTTATAAGTGGTATAACAAGGAGGAAGTGATTCTCGGTAAGAAGATGAAG GATTGGATGCGCTTCAGTGTTGCGTTCTGGCACACGTTCCGCGGTACTGGCEST: gi|211140891|gb|FL328471.1|FL328471
genomic: CTTATAAGTGGTATAACAAGGAGGAAGTGATTCTCGGTAAGAAGATGAAGgtatcgatca ... ttgctattagGATTGGATGCGCTTCAGTGTTGCATTCTGGCACACGTTCCGTGGTACTGGC
EST: CTTATAAGTGGTATAACAAGGAGGAAGTGATTCTCGGTAAGAAGATGAAG GATTGGATGCGCTTCAGTGTTGCGTTCTGGCACACGTTCCGCGGTACTGGCEST: gi|211320715|gb|FL358326.1|FL358326
genomic: CTTATAAGTGGTATAACAAGGAGGAAGTGATTCTCGGTAAGAAGATGAAGgtatcgatca ... ttgctattagGATTGGATGCGCTTCAGTGTTGCATTCTGGCACACGTTCCGTGGTACTGGC
EST: CTTATAAGTGGTATAACAAGGAGGAAGTGATTCTCGGTAAGAAGATGAAG GATTGGATGCGCTTCAGTGTTGCGTTCTGGCACACGTTCCGCGGTACTGGC
genomic: CTTATAAGTGGTATAACAAGGAGGAAGTGATTCTCGGTAAGAAGATGAAGgtatcgatca ... ttgctattagGATTGGATGCGCTTCAGTGTTGCATTCTGGCACACGTTCCGTGGTACTGGC
ctcactgtgaagtacgtcaaccctttgcatctatgcttatttgctttgctattagGATTGGATGCGCTTCAGTGTTGCATTCTGGCACACGTTCCGTGGTACTGGCGCTGATCCTTTCGGTGCTCCTACAAAGACTTGGCCTTGGGAGGACGGCA
cactcac putative branch site (score: 392)
tttgcttt putative PPT
ttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcgatcagtgaatccccatctgctgcttcactataccccctcttttacactcactgtgaagtacgtcaaccctttgcatctatgcttatttgctttgctattagGATTGGATGCGCTTCAGTGTTGCATTCTGGCACACGTTCCGTGGTACTGGCGCTGATCCTTTCGGTGCTCCTACAAAGACTTGGCCTTGGGAGGACGGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA