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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

tTCACCAG

Basic information

species Zea mays
transcript GRMZM2G073415_T03
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149096886|gb|EE182683.2|EE182683
EST:     CATTTGTAAGGCACATATACTCTGCATCAAAGCAAGTTAGTACTGCTGTT                         TCACCAG
genomic: CATTTGTAAGGCACATATACTCTGCATCAAAGCAAGTTAGTACTGCTGTTt ... tTCACCAGgtaatgtaat ... ctt
EST: gi|76291081|gb|DV030649.1|DV030649
EST:     CATTTGTAAGGCACATATACTCTGCATCAAAGCAAGTTAGTACTGCTGTT                         TCACCAG
genomic: CATTTGTAAGGCACATATACTCTGCATCAAAGCAAGTTAGTACTGCTGTTt ... tTCACCAGgtaatgtaat ... ctt
EST: gi|67012407|gb|CO441156.1|CO441156
EST:     CATTTGTAAGGCACATATACTCTGCATCAAAGCAAGTTAGTACTGCTGTT                         TCACCAG
genomic: CATTTGTAAGGCACATATACTCTGCATCAAAGCAAGTTAGTACTGCTGTTt ... tTCACCAGgtaatgtaat ... ctt
EST: gi|60341304|gb|DN208277.1|DN208277
EST:     TTGTAAGGCACATATACTCTGCATCAAAGCAAGTTAGTACTGCTGTT                         TCACCAG
genomic: TTGTAAGGCACATATACTCTGCATCAAAGCAAGTTAGTACTGCTGTTt ... tTCACCAGgtaatgtaat ... ctt
EST: gi|76291080|gb|DV030648.1|DV030648
EST:     CATTTGTAAGGCACATATACTCTGCATCAAAGCAAGTTAGTACTGCTGTT                         TCACCAG
genomic: CATTTGTAAGGCACATATACTCTGCATCAAAGCAAGTTAGTACTGCTGTTt ... tTCACCAGgtaatgtaat ... ctt
EST: gi|91055827|gb|EB166245.1|EB166245
EST:     CATTTGTAAGGCACATATACTCTGCATCAAAGCAAGTTAGTACTGCTGTT                         TCACCAG
genomic: CATTTGTAAGGCACATATACTCTGCATCAAAGCAAGTTAGTACTGCTGTTt ... tTCACCAGgtaatgtaat ... ctt
EST: gi|149104749|gb|EE290203.2|EE290203
EST:     CATTTGTAAGGCACATATACTCTGCATCAAAGCAAGTTAGTATTGCTGTT                         TCACCAG
genomic: CATTTGTAAGGCACATATACTCTGCATCAAAGCAAGTTAGTACTGCTGTTt ... tTCACCAGgtaatgtaat ... ctt
EST: gi|148971483|gb|EE022178.2|EE022178
EST:     CATTTGTAAGGCACATATACTCTGCATCAAAGCAAGTTAGTACTGCTGTT                         TCACCAG
genomic: CATTTGTAAGGCACATATACTCTGCATCAAAGCAAGTTAGTACTGCTGTTt ... tTCACCAGgtaatgtaat ... ctt
EST: gi|60347004|gb|DN213977.1|DN213977
EST:     CATTTGTAAGGCACATATACTCTGCATCAAAGCAAGTTAGTACTGCTGTT                         TCACCAG
genomic: CATTTGTAAGGCACATATACTCTGCATCAAAGCAAGTTAGTACTGCTGTTt ... tTCACCAGgtaatgtaat ... ctt
EST: gi|211119697|gb|FL001617.1|FL001617
EST:     CATTTGTAAGGCACATATACTCTGCATCAAAGCAAGTTAGTACTGCTGTT                         TCACCAG
genomic: CATTTGTAAGGCACATATACTCTGCATCAAAGCAAGTTAGTACTGCTGTTt ... tTCACCAGgtaatgtaat ... ctt