1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtacgacatttacataactacataagttcgtttctatttttcctctttgtgattctactccaaattttgctttgttttggtaaagaaagtgctggtgaacccactgcagGAATCTTCTTGGTGAAGAACTGGCTCCACTTAGCCCAAGTGAACTTGACCAGCTTGAGAGTCAAGTAGACAAGACCTTGAAGCAAATAAGATCAAGAAAG
species | Zea mays |
transcript | GRMZM2G071620_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAATATGTGAAGCTGAAAGCACGAGTTGAGGTTTTACAACACTCGCAAAG GAATCTTCTTGGTGAAGAACTGGCTCCACTTAGCCCAAGTGAACTTGACCAEST: gi|78104753|gb|DV523171.1|DV523171
genomic: GAATATGTGAAGCTGAAAGCACGAGTTGAGGTTTTACAACACTCGCAAAGgtacgacatt ... cccactgcagGAATCTTCTTGGTGAAGAACTGGCTCCACTTAGCCCAAGTGAACTTGACCA
EST: GAATATGTGAAGCTGAAAGCACGAGTTGAGGTTTTACAACACTCGCAAAG GAATCTTCTTGGTGAAGAACTGGCTCCACTTAGCCCAAGTGAACTTGACCAEST: gi|21331630|gb|BQ487011.1|BQ487011
genomic: GAATATGTGAAGCTGAAAGCACGAGTTGAGGTTTTACAACACTCGCAAAGgtacgacatt ... cccactgcagGAATCTTCTTGGTGAAGAACTGGCTCCACTTAGCCCAAGTGAACTTGACCA
EST: GAATATGTGAAGCTGAAAGCACGAGTTGAGGTTTTACAACACTCACAAAG GAATCTTCTTGGTGAAGAACTGGCTCCACTTAGCCCAAGTGAACTTGACCAEST: gi|50326015|gb|CO521141.1|CO521141
genomic: GAATATGTGAAGCTGAAAGCACGAGTTGAGGTTTTACAACACTCGCAAAGgtacgacatt ... cccactgcagGAATCTTCTTGGTGAAGAACTGGCTCCACTTAGCCCAAGTGAACTTGACCA
EST: GAATATGTGAAGCTGAAAGCACGAGTTGAGGTTTTACAACACTCGCAAAG GAATCTTCTTGGTGAAGAACTGGCTCCACTTAGCCCAAGTGAACTTGACCAEST: gi|211530058|gb|FL388005.1|FL388005
genomic: GAATATGTGAAGCTGAAAGCACGAGTTGAGGTTTTACAACACTCGCAAAGgtacgacatt ... cccactgcagGAATCTTCTTGGTGAAGAACTGGCTCCACTTAGCCCAAGTGAACTTGACCA
EST: GAATATGTGAAGCTGAAAGCACGAGTTGAGGTTTTACAACACTCGCAAAG GAATCTTCTTGGTGAAGAACTGGCTCCACTTAGCCCAAGTGAACTTGACCAEST: gi|71448410|gb|DR829460.1|DR829460
genomic: GAATATGTGAAGCTGAAAGCACGAGTTGAGGTTTTACAACACTCGCAAAGgtacgacatt ... cccactgcagGAATCTTCTTGGTGAAGAACTGGCTCCACTTAGCCCAAGTGAACTTGACCA
EST: GAATATGTGAAGCTGAAAGCACGAGTTGAGGTTTTACAACACTCGCAAAG GAATCTTCTTGGTGAAGAACTGGCTCCACTTAGCCCAAGTGAACTTGACCAEST: gi|101383824|gb|EB813967.1|EB813967
genomic: GAATATGTGAAGCTGAAAGCACGAGTTGAGGTTTTACAACACTCGCAAAGgtacgacatt ... cccactgcagGAATCTTCTTGGTGAAGAACTGGCTCCACTTAGCCCAAGTGAACTTGACCA
EST: GAATATGTGAAGCTGAAAGCACGAGTTGAGGTTTTACAACACTCGCAAAG GAATCTTCTTGGTGAAGAACTGGCTCCACTTAGCCCAAGTGAACTTGACCAEST: gi|71762711|gb|DR960648.1|DR960648
genomic: GAATATGTGAAGCTGAAAGCACGAGTTGAGGTTTTACAACACTCGCAAAGgtacgacatt ... cccactgcagGAATCTTCTTGGTGAAGAACTGGCTCCACTTAGCCCAAGTGAACTTGACCA
EST: AAGCTGAAAGCACGAGTTGAGGTTTTACAACACTCGCAAAG GAATCTTCTTGGTGAAGAACTGGCTCCACTTAGCCCAAGTGAACTTGACCAEST: gi|93016628|gb|EB642148.1|EB642148
genomic: AAGCTGAAAGCACGAGTTGAGGTTTTACAACACTCGCAAAGgtacgacatt ... cccactgcagGAATCTTCTTGGTGAAGAACTGGCTCCACTTAGCCCAAGTGAACTTGACCA
EST: GAATATGTGAAGCTGAAAGCACGAGTTGAGGGTTTACAACACTCGCAAAG GAATCTTCTTGGTGAAGAACTGGCTCEST: gi|50325855|gb|CO520981.1|CO520981
genomic: GAATATGTGAAGCTGAAAGCACGAGTTGAGGTTTTACAACACTCGCAAAGgtacgacatt ... cccactgcagGAATCTTCTTGGTGAAGAACTGGCTC
EST: GAATATGTGAAGCTGAAAGCACGAGTTGAGGTTTTACAACACTCGCAAAG GAATCTTCTTGGTGAAGAACTGGCTCCACTTAGCCCAAGTGAACTTGACCAEST: gi|30031661|gb|CB833512.1|CB833512
genomic: GAATATGTGAAGCTGAAAGCACGAGTTGAGGTTTTACAACACTCGCAAAGgtacgacatt ... cccactgcagGAATCTTCTTGGTGAAGAACTGGCTCCACTTAGCCCAAGTGAACTTGACCA
EST: AATATGTGAAGCTGAAAGCACGAGTTGAGGTTGTTACAACACTCGCAAAG GAATCTTCTTGGTGAAGAACTGGCTCCACTTAGCCCAAGGGAACTTGACCAEST: gi|76285216|gb|DV024784.1|DV024784
genomic: AATATGTGAAGCTGAAAGCACGAGTTGAGGTT-TTACAACACTCGCAAAGgtacgacatt ... cccactgcagGAATCTTCTTGGTGAAGAACTGGCTCCACTTAGCCCAAGTGAACTTGACCA
EST: GAATATGTGAAGCTGAAAGCACGAGTTGAGGTTTTACAACACTCGCAAAG GAATCTTCTTGGTGAAGAACTGGCTCCACTTAGCCCAAGTGAACTTGACCAEST: gi|32836421|gb|CD976099.1|CD976099
genomic: GAATATGTGAAGCTGAAAGCACGAGTTGAGGTTTTACAACACTCGCAAAGgtacgacatt ... cccactgcagGAATCTTCTTGGTGAAGAACTGGCTCCACTTAGCCCAAGTGAACTTGACCA
EST: GAATATGTGAAGCTGAAAGCACGAGTTGAGGTTTTACAACACTCACAAAG GAATCTTCTTGGTGAAGAACTGGCTCCACTTAGCCCAAGTGAACTTGACCA
genomic: GAATATGTGAAGCTGAAAGCACGAGTTGAGGTTTTACAACACTCGCAAAGgtacgacatt ... cccactgcagGAATCTTCTTGGTGAAGAACTGGCTCCACTTAGCCCAAGTGAACTTGACCA
ctactccaaattttgctttgttttggtaaagaaagtgctggtgaacccactgcagGAATCTTCTTGGTGAAGAACTGGCTCCACTTAGCCCAAGTGAACTTGACCAGCTTGAGAGTCAAGTAGACAAGACCTTGAAGCAAATAAGATCAAGAAAG
aaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgacatttacataactacataagttcgtttctatttttcctctttgtgattctactccaaattttgctttgttttggtaaagaaagtgctggtgaacccactgcagGAATCTTCTTGGTGAAGAACTGGCTCCACTTAGCCCAAGTGAACTTGACCAGCTTGAGAGTCAAGTAGACAAGACCTTGAAGCAAATAAGATCAAGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA