1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gttctaatcatgttctgctatatttgtttgtacttattttatataattactatttgttgcaataatgacttttagtgtttgtcctcctcttttcagGCCTCTTGTATTTTCCAGTCGATGAAGATTGATATGCTCTCAAGAATGATTCCGTTCTTTGACTTTTTTGTTGTGGAGAAGATTTCTGTTGTTGCTGTGA
species | Zea mays |
transcript | GRMZM2G070487_T04 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGTATATTTCAGCATTGGAGAAGCTGACAGCATTGAGAGTGTTACAACAG GCCTCTTGTATTTTCCAGTCGATGAAGATTGATATGCTCTCAAGAATGATTEST: gi|32928599|gb|CF033411.1|CF033411
genomic: AGTATATTTCAGCATTGGAGAAGCTGACAGCATTGAGAGTGTTACAACAGgttctaatca ... ctcttttcagGCCTCTTGTATTTTCCAGTCGATGAAGATTGATATGCTCTCAAGAATGATT
EST: AGTATATTTCAGCATTGGAGAAGCTGACAGCATTGAGAGTGTTACAACAG GCCTCTTGTATTTTCCAGTCGATGAAGATTGATATGCTCTCAAGAATGATTEST: gi|113658987|gb|DW816157.1|DW816157
genomic: AGTATATTTCAGCATTGGAGAAGCTGACAGCATTGAGAGTGTTACAACAGgttctaatca ... ctcttttcagGCCTCTTGTATTTTCCAGTCGATGAAGATTGATATGCTCTCAAGAATGATT
EST: GTATATTTCAGACATTGGAGAAGCTGACAGCATTGAGAGTGTTACAACAG GCCTCTTGTATTTTCCAGTCGATGAAGA
genomic: GTATATTTCAG-CATTGGAGAAGCTGACAGCATTGAGAGTGTTACAACAGgttctaatca ... ctcttttcagGCCTCTTGTATTTTCCAGTCGATGAAGA
tataattactatttgttgcaataatgacttttagtgtttgtcctcctcttttcagGCCTCTTGTATTTTCCAGTCGATGAAGATTGATATGCTCTCAAGAATGATTCCGTTCTTTGACTTTTTTGTTGTGGAGAAGATTTCTGTTGTTGCTGTGA
tgtttgtcctcctctt CT-rich tract
aataatgactttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttctaatcatgttctgctatatttgtttgtacttattttatataattactatttgttgcaataatgacttttagtgtttgtcctcctcttttcagGCCTCTTGTATTTTCCAGTCGATGAAGATTGATATGCTCTCAAGAATGATTCCGTTCTTTGACTTTTTTGTTGTGGAGAAGATTTCTGTTGTTGCTGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA