Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attctgaatatagtctgtttccaatagtttgtggctagcttttcaactcaatcttggccataattccaatgttatattctaaaagtatctgtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAGTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG

Basic information

species Zea mays
transcript GRMZM2G070360_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G070360_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g46980.1 (Oryza sativa), 3'ss of exon 4
attctgaat--atagtctgtttccaatagtttgtggctagcttttcaactcaatcttggccataattccaatgttatattctaaaagtatctgtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAGTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG
 ||   |||  ||||  |  || ||||          |  || |    || |||| ||      || |   |||| ||| |||| |  || ||||||| ||||||||||||| ||||  ||||||||||||||||||||||||||| |||||  |||||||| ||||| ||||||||||| |||||||||||||| || |||
-tttgaaatccatagcttcgtttcaatttcaatacttttactgtagttcttaatcctgatatggatcctgctgtt-tatgctaatataatgtgtttatgcagCTCTGGAGGTGTTGTGCTGGCTTCTCGAGATGGAAAGATTGTGTGTGAGAACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAG

upper sequence: GRMZM2G070360_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA08G02390.2 (Glycine max), 3'ss of exon 4
--attctgaatatagtctgtttccaatagtttgtggctagcttttcaactcaatcttggccataattccaatgttatat-tctaaaagtatctgtt--tattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAGTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG
   ||   ||| |    ||     ||||   |     |||||||| ||||   |      || | |||   |||   |   || |   | | ||||  ||||||||||||| ||  | || ||||||||||| |||||||||||||||| ||| | ||||||||| ||  | || || || |||||||| || ||  | ||||||
cagtttcaaatct----tgagattaataaaatcatattagctttt-aactgctttgatatcaaatttcagttgtagcacacctgattttttttgttgatattcagCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG

upper sequence: GRMZM2G070360_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA05G37150.1 (Glycine max), 3'ss of exon 4
---attctgaatatagtctgtttccaatagtttgtggctagcttttcaactca-atcttggccataattccaatgttatattctaaaagtatctgtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAGTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG
    |  |  ||  |   |  |||| | | |       ||||||||    | | || |       | ||  |     |  |  | |   ||  || | |||||||||||| ||  | || ||||||||||| ||||||||||||||||  || | ||| ||||| ||  |||| || || || ||||| || ||  | ||||||
tttgtagttgattgaagatacttcctaaaatcat--attagcttttttttttatatttaaatttcagttgtagcacaac-tgattattttaattgat-attcagCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGCGAAAATACTCTTGATGCACGACTTGATGTAGTGTTCCGTAAAAAGCTTCCAGAG

upper sequence: GRMZM2G070360_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA08G02420.1 (Glycine max), 3'ss of exon 4
attctgaatatagtctgtttccaatagtttgtggctagcttttcaactcaatcttggccataattccaatgttatattctaaaagtatctgttt---attcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAGTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG
 |  |  ||  ||  || |||| | | ||      ||| | ||     |  |  |    | | |||   |||   |  |   |    | |  ||   |||||||||||| ||  | || ||||||||||| |||||||||||||||| ||| | ||| ||||| ||  |||| || || || ||||| || ||  | ||||||
-tagttgattgagaatgcttcctaaaattat--attagatattagctgctttgatatttaaatttcagttgtagcacacctgattcttttaattgatattcagCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAATACTCTTGATGCACGACTTGATGTAGTGTTCCGTAAAAAGCTTCCAGAG

upper sequence: GRMZM2G070360_T01 (Zea mays), 3'ss of exon 4
lower sequence: Vv02s0025g01000.t01 (Vitis vinifera), 3'ss of exon 4
----attctgaatatagtctgtttccaatagtttgtggctagcttttcaactcaatcttggccataattccaatgttatattctaaaagtatctgtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAGTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG
       |||  | | |    |    || | ||       |||||||    | ||         | ||   || |   | |  ||  ||  | |   | | ||||||||||||| | || ||||||||||||||||| || ||||| | |||||  || ||||| || ||| |||| ||||| ||||| || ||| | ||||||
tgtggggctgtttgtgggaaataaataacatttgtaaaacagctttt--gttgaaag--aatagtgatggaaaagccctctgatattagcttttcactgtccagCTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60343804|gb|DN210777.1|DN210777
EST:     GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTG                         CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|86473168|gb|DY239538.1|DY239538
EST:     GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGCCCAGTTTTG                         CTCTGGAGGTATTGTCTGGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|60398792|gb|DN231608.1|DN231608
EST:     GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTG                         CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|78090480|gb|DV518854.1|DV518854
EST:     GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTG                         CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|93017021|gb|EB642541.1|EB642541
EST:     GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTG                         CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|71440306|gb|DR821356.1|DR821356
EST:     GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTG                         CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|91056063|gb|EB166481.1|EB166481
EST:     GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTG                         CTCTGGAGGTATTGTCTTGNCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|12968344|gb|BG265290.1|BG265290
EST:     GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTG                         CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|76291539|gb|DV031107.1|DV031107
EST:     GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTG                         CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|61118336|gb|DN559297.1|DN559297
EST:     GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTG                         CTCTGGAGGTATTGTCTTGGCTT
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTT
EST: gi|6227149|gb|AW155678.1|AW155678
EST:     GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTG                         CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|6102086|gb|AW126556.1|AW126556
EST:     GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTG                         CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|5871047|gb|AW017623.1|AW017623
EST:     GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTG                         CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|5917377|gb|AW054168.1|AW054168
EST:     GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTG                         CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|60338784|gb|DN205757.1|DN205757
EST:     GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTG                         CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTCTTTGAGAG
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|5871032|gb|AW017608.1|AW017608
EST:     GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTG                         CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|78021201|gb|DV489588.1|DV489588
EST:     GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTG                         CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|5871144|gb|AW017585.1|AW017585
EST:     GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTG                         CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|6020701|gb|AW065509.1|AW065509
EST:     GTGTACCTAC-ACCTGCCC-AAGCCATCATGATGCTCACGGCCAGTTTTG                         CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGGGTTTGAGAG
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|93017020|gb|EB642540.1|EB642540
EST:     GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTG                         CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|78021681|gb|DV490068.1|DV490068
EST:     GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTG                         CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|60353247|gb|DN220220.1|DN220220
EST:     GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTG                         CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|78022447|gb|DV490834.1|DV490834
EST:     GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTG                         CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|211532713|gb|FL481428.1|FL481428
EST:     GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTG                         CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|211317007|gb|FL374745.1|FL374745
EST:     GGTACCTACCACCTGCCCCTAGCCATCATGATTGCTCACGGCCAGTTTTG                         CTCCTGGGAAGGTATTGTCCTGGGCT-CTCGAGATGG
genomic: G-TACCTACCACCTGCCCCAAGCCATCATGAT-GCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTC-TGG-A-GGTATTGTCTTGG-CTTCTCGAGATGG
EST: gi|5819339|gb|AI987545.1|AI987545
EST:     GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTG                         CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|5597260|gb|AI891253.1|AI891253
EST:     CTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTG                         CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: CTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|32866481|gb|CF006163.1|CF006163
EST:     GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTG                         CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|93017438|gb|EB642958.1|EB642958
EST:     GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTG                         CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|37424388|gb|CF649926.1|CF649926
EST:     GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTG                         CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|6194518|gb|AW146622.1|AW146622
EST:     GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTNTG                         CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|4967015|gb|AI691793.1|AI691793
EST:     GTGTACCTACCCCCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTG                         CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|94474763|gb|EB703721.1|EB703721
EST:     GTGTACCTACCCCCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTG                         CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|6227120|gb|AW155649.1|AW155649
EST:     GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTG                         CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|116817248|gb|EC860065.1|EC860065
EST:     GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCGGTTTTG                         CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTG
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTG
EST: gi|5455944|gb|AI833634.1|AI833634
EST:     GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTG                         CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|74235297|gb|DT643211.1|DT643211
EST:     GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTG                         CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|60353442|gb|DN220415.1|DN220415
EST:     GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTG                         CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|9254374|gb|BE344842.1|BE344842
EST:     GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTG                         CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|93282317|gb|EB674581.1|EB674581
EST:     GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTG                         CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|71331382|gb|DR802528.1|DR802528
EST:     GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTG                         CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|211513370|gb|FL031772.1|FL031772
EST:     GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTG                         CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|149095115|gb|EE180726.2|EE180726
EST:     GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTG                         CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|5871489|gb|AW017960.1|AW017960
EST:     GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTG                         CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|60354680|gb|DN221653.1|DN221653
EST:     GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTG                         CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|6194534|gb|AW146638.1|AW146638
EST:     GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTNTG                         CTCTGGAGGTATTGTCTTGGCTTCTCGA
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGA
EST: gi|71440305|gb|DR821355.1|DR821355
EST:     GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTG                         CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|94478080|gb|EB707038.1|EB707038
EST:     GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTG                         CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|60358982|gb|DN225955.1|DN225955
EST:     GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTG                         CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|148933452|gb|EC877146.2|EC877146
EST:     GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTG                         CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|6828162|gb|AW331805.1|AW331805
EST:     GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTG                         CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|60355195|gb|DN222168.1|DN222168
EST:     GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTG                         CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|5343244|gb|AI795549.1|AI795549
EST:     GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTG                         CTCTGGAGGTAT
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTAT
EST: gi|74244980|gb|DT652894.1|DT652894
EST:     GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTG                         CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|5739691|gb|AI947267.1|AI947267
EST:     GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTG                         CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|67017910|gb|CO446659.1|CO446659
EST:     GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTG                         CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|5847170|gb|AW000249.1|AW000249
EST:     GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTG                         CTCTGGAGGTATTGTCTTGGCTTC
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTC
EST: gi|149077234|gb|EE165904.2|EE165904
EST:     GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTG                         CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|60349876|gb|DN216849.1|DN216849
EST:     GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTG                         CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|91873822|gb|EB403779.1|EB403779
EST:     GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTG                         CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 235

ATGCATCAAAAGCAGATGTCCATGAACCAGAGATATTTGTTGACCATGATGTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAGTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 561

ATGCATCAAAAGCAGATGTCCATGAACCAGAGATATTTGTTGACCATGATGTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAGTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 357

ATGCATCAAAAGCAGATGTCCATGAACCAGAGATATTTGTTGACCATGATGTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAGTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 339

ATGCATCAAAAGCAGATGTCCATGAACCAGAGATATTTGTTGACCATGATGTGTACCTACCACCTGCCCCAAGCCATCATGATGCTCACGGCCAGTTTTGgtaatgtttg ... gtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAGTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actcaatcttggccataattccaatgttatattctaaaagtatctgtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAGTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG
                               ttctaaa  putative branch site (score: 339)
                                          tctgttt  putative PPT
                      aatgttatattctaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
attctgaatatagtctgtttccaatagtttgtggctagcttttcaactcaatcttggccataattccaatgttatattctaaaagtatctgtttattcagCTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAGTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA
-ttctgaa
- - - - - - -tctgttt
- - - - - - - - - - - - - - -tgtggct
- - - - - - - - - - - - - - - - - - - - - - aactcaa