1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...caatgtatatgttataatatgtgttccaaattcatttattgtttctctctggttacatcagttccacttggaaataattaatatcgtgttgctttattagGAATTTATTGAAGCTACAAAGGAGCCAGGGCTTACCTTCATGGTTGCAAAATTTGATGGCATTCTTGGGCTAGGCTTTCAAGAAATCTCTGTTGGGAATG
species | Zea mays |
transcript | GRMZM2G065757_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTTTCAGTGAGGATAGCGTTACATTAGGTGATCTGGTTGTGAAGGATCAG GAATTTATTGAAGCTACAAAGGAGCCAGGGCTTACCTTCATGGTTGCAAAAEST: gi|149078470|gb|EE167250.2|EE167250
genomic: TTTTCAGTGAGGATAGCGTTACATTAGGTGATCTGGTTGTGAAGGATCAGgttagtgcac ... gctttattagGAATTTATTGAAGCTACAAAGGAGCCAGGGCTTACCTTCATGGTTGCAAAA
EST: TTTTCAGTGAGGATAGCGTTACATTAGGTGATCTGGTTGTGAAGGATCAG GAATTTATTGAAGCTACAAAGGAGCCAGGGCTTACCTTCATGGTTGCAAAAEST: gi|32830382|gb|CD970060.1|CD970060
genomic: TTTTCAGTGAGGATAGCGTTACATTAGGTGATCTGGTTGTGAAGGATCAGgttagtgcac ... gctttattagGAATTTATTGAAGCTACAAAGGAGCCAGGGCTTACCTTCATGGTTGCAAAA
EST: TTTTCAGTGAGGATAGCGTTACATTAGGTGATCTGGTTGTGAAGGATCAG GACTTTATTGAAGCTACAAAGGAGCCAGGGCTTACCTTCATGGTTGCAAAAEST: gi|32840007|gb|CD979688.1|CD979688
genomic: TTTTCAGTGAGGATAGCGTTACATTAGGTGATCTGGTTGTGAAGGATCAGgttagtgcac ... gctttattagGAATTTATTGAAGCTACAAAGGAGCCAGGGCTTACCTTCATGGTTGCAAAA
EST: TTTTCAGTGAGGATAGCGTTACATTAGGTGATCTGGTTGTGAAGGATCAG GAATTTATTGAAGCTACAAAGGAGCCAGGGCTTACCTTCATGGTTGCAAAAEST: gi|32850768|gb|CD990449.1|CD990449
genomic: TTTTCAGTGAGGATAGCGTTACATTAGGTGATCTGGTTGTGAAGGATCAGgttagtgcac ... gctttattagGAATTTATTGAAGCTACAAAGGAGCCAGGGCTTACCTTCATGGTTGCAAAA
EST: TTTTCAGTGAGGATAGCGCTACATTAGGTGATCTGGTTGTGAAGGATCAG GAATTTATTGAAGCTACAAAGGAGCCAGGGCTTACCTTCATGGTTGCAAAAEST: gi|50338072|gb|CO533198.1|CO533198
genomic: TTTTCAGTGAGGATAGCGTTACATTAGGTGATCTGGTTGTGAAGGATCAGgttagtgcac ... gctttattagGAATTTATTGAAGCTACAAAGGAGCCAGGGCTTACCTTCATGGTTGCAAAA
EST: TTTTCAGTGAGGATAGCGTTACATTAGGTGATCTGGTTGTGAAGGATCAG GAATTTATTGAAGCTACAAAGGAGCCAGGGCTTACCTTCATGGTTGCAAAAEST: gi|32839505|gb|CD979186.1|CD979186
genomic: TTTTCAGTGAGGATAGCGTTACATTAGGTGATCTGGTTGTGAAGGATCAGgttagtgcac ... gctttattagGAATTTATTGAAGCTACAAAGGAGCCAGGGCTTACCTTCATGGTTGCAAAA
EST: TTTTCAGTGAGGATAGCGTTACATTAGGTGATCTGGTTGTGAAGGATCAG GAATTTATTGAAGCTACAAAGGAGCCAGGGCTTACCTTCATGGTTGCAAAAEST: gi|211514658|gb|FK981816.1|FK981816
genomic: TTTTCAGTGAGGATAGCGTTACATTAGGTGATCTGGTTGTGAAGGATCAGgttagtgcac ... gctttattagGAATTTATTGAAGCTACAAAGGAGCCAGGGCTTACCTTCATGGTTGCAAAA
EST: TTTTCAGTGAGGATAGCGTTACATTAGGTGATCTGGTTGTGAAGGATCAG GAATTTATTGAAGCTACAAAGGAGCCAGGGCTTACCTTCATGGNTGCAAAAEST: gi|32839962|gb|CD979643.1|CD979643
genomic: TTTTCAGTGAGGATAGCGTTACATTAGGTGATCTGGTTGTGAAGGATCAGgttagtgcac ... gctttattagGAATTTATTGAAGCTACAAAGGAGCCAGGGCTTACCTTCATGGTTGCAAAA
EST: TTTTCAGTGAGGATAGCGGTACATTAGGTGATCTGGTTGTGAAGGATCAG GAATTTATTGAAGCTACAAAGGAGCCAGGGCTTACCTTCATGGTTGCAAAAEST: gi|32839693|gb|CD979374.1|CD979374
genomic: TTTTCAGTGAGGATAGCGTTACATTAGGTGATCTGGTTGTGAAGGATCAGgttagtgcac ... gctttattagGAATTTATTGAAGCTACAAAGGAGCCAGGGCTTACCTTCATGGTTGCAAAA
EST: TTTTCAGTGAGGATAGCGTTACATTAGGTGATCTGGTTGTGAAGGATCAG GAATTTATTGAAGCTACAAAGGAGCCAGGGCTTACCTTCATGGTTGCAAAAEST: gi|148956524|gb|EC902364.2|EC902364
genomic: TTTTCAGTGAGGATAGCGTTACATTAGGTGATCTGGTTGTGAAGGATCAGgttagtgcac ... gctttattagGAATTTATTGAAGCTACAAAGGAGCCAGGGCTTACCTTCATGGTTGCAAAA
EST: TTTTCAGTGAGGATAGCGTTACATTAGGTGATCTGGTTGTGAAGGATCAG GAATTTATTGAAGCTACAAAGGAGCCAGGGCTTACCTTCATGGTTGCAAAAEST: gi|211312095|gb|FL216082.1|FL216082
genomic: TTTTCAGTGAGGATAGCGTTACATTAGGTGATCTGGTTGTGAAGGATCAGgttagtgcac ... gctttattagGAATTTATTGAAGCTACAAAGGAGCCAGGGCTTACCTTCATGGTTGCAAAA
EST: TTTTCAGTGAGGATAGCGTTACATTAGGTGATCTGGTTGTGAAGGATCAG GAATTTATTGAAGCTACAAAGGAGCCAGGGCTTACCTTCATGGTTGCAAAAEST: gi|148931369|gb|EC874278.2|EC874278
genomic: TTTTCAGTGAGGATAGCGTTACATTAGGTGATCTGGTTGTGAAGGATCAGgttagtgcac ... gctttattagGAATTTATTGAAGCTACAAAGGAGCCAGGGCTTACCTTCATGGTTGCAAAA
EST: TTTTCAGTGAGGATAGCGTTACATTAGGTGATCTGGTTGTGAAGGATCAG GAATTTATTGAAGCTACAAAGGAGCCAGGGCTTACCTTCATGGTTGCAAAAEST: gi|211224724|gb|FL222442.1|FL222442
genomic: TTTTCAGTGAGGATAGCGTTACATTAGGTGATCTGGTTGTGAAGGATCAGgttagtgcac ... gctttattagGAATTTATTGAAGCTACAAAGGAGCCAGGGCTTACCTTCATGGTTGCAAAA
EST: CGTTACATTAGGTGATCTGGTTGTGAAGGATCAG GAATTTATTGAAGCTACAAAGGAGCCAGGGCTTACCTTCATGGTTGCAAAAEST: gi|33099258|gb|CF059218.1|CF059218
genomic: CGTTACATTAGGTGATCTGGTTGTGAAGGATCAGgttagtgcac ... gctttattagGAATTTATTGAAGCTACAAAGGAGCCAGGGCTTACCTTCATGGTTGCAAAA
EST: TTTTCAGTGAGGATAGCGTTACATTAGGTGATCTGGTTGTGAAGGATCAG GAATTTATTGAAGCTACAAAGGAGCCAGGGCTTACCTTCATGGTTGCAAAA
genomic: TTTTCAGTGAGGATAGCGTTACATTAGGTGATCTGGTTGTGAAGGATCAGgttagtgcac ... gctttattagGAATTTATTGAAGCTACAAAGGAGCCAGGGCTTACCTTCATGGTTGCAAAA
tctctggttacatcagttccacttggaaataattaatatcgtgttgctttattagGAATTTATTGAAGCTACAAAGGAGCCAGGGCTTACCTTCATGGTTGCAAAATTTGATGGCATTCTTGGGCTAGGCTTTCAAGAAATCTCTGTTGGGAATG
aattaat putative branch site (score: 3)
ttgcttt putative PPT
ttggaaataattaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caatgtatatgttataatatgtgttccaaattcatttattgtttctctctggttacatcagttccacttggaaataattaatatcgtgttgctttattagGAATTTATTGAAGCTACAAAGGAGCCAGGGCTTACCTTCATGGTTGCAAAATTTGATGGCATTCTTGGGCTAGGCTTTCAAGAAATCTCTGTTGGGAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - ttcattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaataa