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...tatttttatgccttttctttgtcttctccaacaataattacattatgtaaaaatatgcagcctattaatataatttcttaccttaatgcttgttaatcagCTGAGTTTGAGTGAGATAAAAGAGCTCTATGGCACACGGCATATTGGCAGAGATCAAGCTCGTCATCTTGTTGGGCTGATGGATGTCTTCTGTTTTAGTG
species | Zea mays |
transcript | GRMZM2G040945_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATTTCTTCGGCTCTATTGAACCAGATGGTTGCTTCTTTGGGCGGCAAAGG CTGAGTTTGAGTGAGATAAAAGAGCTCTATGGCACACGGCATATTGGCAGAEST: gi|76020827|gb|DT947997.1|DT947997
genomic: ATTTCTTCGGCTCTATTGAACCAGATGGTTGCTTCTTTGGGCGGCAAAGGgtaatatgct ... tgttaatcagCTGAGTTTGAGTGAGATAAAAGAGCTCTATGGCACACGGCATATTGGCAGA
EST: ATTTCTTCGGCTCTATTGAACCAGATGGTTGCTTCTTTGGGCGGCAAAGG CTGAGTTTGAGTGAGATAAAAGAGCTCTATGGCACACGGCATATTGGCAGAEST: gi|76020213|gb|DT947383.1|DT947383
genomic: ATTTCTTCGGCTCTATTGAACCAGATGGTTGCTTCTTTGGGCGGCAAAGGgtaatatgct ... tgttaatcagCTGAGTTTGAGTGAGATAAAAGAGCTCTATGGCACACGGCATATTGGCAGA
EST: ATTTCTTCGGCTCTATTGAACCAGATGGTTGCTTCTTTGGGCGGCAAAGG CTGAGTTTGAGTGAGATAAAAGAGCTCTATGGCACACGGCATATTGGCAGAEST: gi|76915905|gb|DV166160.1|DV166160
genomic: ATTTCTTCGGCTCTATTGAACCAGATGGTTGCTTCTTTGGGCGGCAAAGGgtaatatgct ... tgttaatcagCTGAGTTTGAGTGAGATAAAAGAGCTCTATGGCACACGGCATATTGGCAGA
EST: ATTTCTTCGGCTCTATTGAACCAGATGGTTGCTTCTTTGGGCGGCAAAGG CTGAGTTTGAGTGAGATAAAAGAGCTCTATGGCACACGGCATATTGGCAGAEST: gi|76925058|gb|DV170275.1|DV170275
genomic: ATTTCTTCGGCTCTATTGAACCAGATGGTTGCTTCTTTGGGCGGCAAAGGgtaatatgct ... tgttaatcagCTGAGTTTGAGTGAGATAAAAGAGCTCTATGGCACACGGCATATTGGCAGA
EST: ATTTCTTCGGCTCTATTGAACCAGATGGTTGCTTCTTTGGGCGGCAAAGG CTGAGTTTGAGTGAGATAAAAGAGCTCTATGGCACACGGCATATTGGCAGAEST: gi|93283038|gb|EB675302.1|EB675302
genomic: ATTTCTTCGGCTCTATTGAACCAGATGGTTGCTTCTTTGGGCGGCAAAGGgtaatatgct ... tgttaatcagCTGAGTTTGAGTGAGATAAAAGAGCTCTATGGCACACGGCATATTGGCAGA
EST: ATTTCTTCGGCTCTATTGAACCAGATGGTTGCTTCTTTGGGCGGCAAAGG CTGAGTTTGAGTGAGATAAAAGAGCTCTATGGCACACGGCATATTGGCAGAEST: gi|78103885|gb|DV522308.1|DV522308
genomic: ATTTCTTCGGCTCTATTGAACCAGATGGTTGCTTCTTTGGGCGGCAAAGGgtaatatgct ... tgttaatcagCTGAGTTTGAGTGAGATAAAAGAGCTCTATGGCACACGGCATATTGGCAGA
EST: ATTTCTTCGGCTCTATTGAACCAGATGGTTGCTTCTTTGGGCGGCAAAGG CTGAGTTTGAGTGAGATAAAAGAGCTCTATGGCACACGGCATATTGGCAGAEST: gi|71417284|gb|DR803998.1|DR803998
genomic: ATTTCTTCGGCTCTATTGAACCAGATGGTTGCTTCTTTGGGCGGCAAAGGgtaatatgct ... tgttaatcagCTGAGTTTGAGTGAGATAAAAGAGCTCTATGGCACACGGCATATTGGCAGA
EST: ATTTCTTCGGCTCTATTGAACCAGATGGTTGCTTCTTTGGGCGGCAAAGG CTGAGTTTGAGTGAGATAAAAGAGCTCTATGGCACACGGCATATTGGCAGAEST: gi|94475337|gb|EB704295.1|EB704295
genomic: ATTTCTTCGGCTCTATTGAACCAGATGGTTGCTTCTTTGGGCGGCAAAGGgtaatatgct ... tgttaatcagCTGAGTTTGAGTGAGATAAAAGAGCTCTATGGCACACGGCATATTGGCAGA
EST: ATTTCTTCGGCTCTATTGAACCAGATGGTTGCTTCTTTGGGCGGCAAAGG CTGAGTTTGAGTGAGATAAAAGAGCTCTATGGCACACGGCATATTGGCAGAEST: gi|78111525|gb|DV529922.1|DV529922
genomic: ATTTCTTCGGCTCTATTGAACCAGATGGTTGCTTCTTTGGGCGGCAAAGGgtaatatgct ... tgttaatcagCTGAGTTTGAGTGAGATAAAAGAGCTCTATGGCACACGGCATATTGGCAGA
EST: ATTTCTTCGGCTCTATTGAACCAGATGGTTGCTTCTTTGGGCGGCAAAGG CTGAGTTTGAGTGAGATAAAAGAGCTCTATGGCACACGGCATATTGGCAGA
genomic: ATTTCTTCGGCTCTATTGAACCAGATGGTTGCTTCTTTGGGCGGCAAAGGgtaatatgct ... tgttaatcagCTGAGTTTGAGTGAGATAAAAGAGCTCTATGGCACACGGCATATTGGCAGA
tgtaaaaatatgcagcctattaatataatttcttaccttaatgcttgttaatcagCTGAGTTTGAGTGAGATAAAAGAGCTCTATGGCACACGGCATATTGGCAGAGATCAAGCTCGTCATCTTGTTGGGCTGATGGATGTCTTCTGTTTTAGTG
tattaatataatttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatttttatgccttttctttgtcttctccaacaataattacattatgtaaaaatatgcagcctattaatataatttcttaccttaatgcttgttaatcagCTGAGTTTGAGTGAGATAAAAGAGCTCTATGGCACACGGCATATTGGCAGAGATCAAGCTCGTCATCTTGTTGGGCTGATGGATGTCTTCTGTTTTAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - tgccttt
- - - - - - - - - - - - - - caacaat
- - - - - - - - - - - - - - - - - - - - - - - - aaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcagcc