1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtatcatcagtattcattttagaaacccttatgtggaaggactaatatctctctgaattcttctctaacagatactttatgatgaaaatcaaatagTTACAGGAGTCGCAACCAATGATGTTGGTATTGCTAAGGATGGTACCAAAAGGGAAACTTTTCAACCTGGTGTAGAACTAAGAG
species | Zea mays |
transcript | GRMZM2G032222_T03 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGCTGAAGAGTTGGGTGTTGAAGTGTATCCAGGTTTTGCTGCTAGTGAG TTACAGGAGTCGCAACCAATGATGTTGGTATTGCTAAGGGATGGTACCAAAEST: gi|76020279|gb|DT947449.1|DT947449
genomic: AAGCTGAAGAGTTGGGTGTTGAAGTGTATCCAGGTTTTGCTGCTAGTGAGgtatcatcag ... aatcaaatagTTACAGGAGTCGCAACCAATGATGTTGGTATTGCTAAGG-ATGGTACCAAA
EST: AAGCTGAAGAGTTGGGTGTTGAAGTGTATCCAGGTTTTGCTGCTAGTGAG TTACAGGAGTCGCAACCAATGATGTTGGTATTGCTAAGGATGGTACTCAAAEST: gi|21809981|gb|BQ668299.1|BQ668299
genomic: AAGCTGAAGAGTTGGGTGTTGAAGTGTATCCAGGTTTTGCTGCTAGTGAGgtatcatcag ... aatcaaatagTTACAGGAGTCGCAACCAATGATGTTGGTATTGCTAAGGATGGTAC-CAAA
EST: AAGCTGAAGAGTTGGGTGTTGAAGTGTATCCAGGTTTTGCTGCTAGTGAG TTACAGGAGTCGCAACCAATGATGTTGGTATTGCTAAGGATGGTACCAAAAEST: gi|211360621|gb|FL160384.1|FL160384
genomic: AAGCTGAAGAGTTGGGTGTTGAAGTGTATCCAGGTTTTGCTGCTAGTGAGgtatcatcag ... aatcaaatagTTACAGGAGTCGCAACCAATGATGTTGGTATTGCTAAGGATGGTACCAAAA
EST: AAGCTGAAGAGTTGGGTGTTGAAGTGTATCCAGGTTTTGCTGCTAGTGAG TTACAGGAGTCGCAACCAATGATGTTGGTATTGCTAAGGATGGTACCAAAA
genomic: AAGCTGAAGAGTTGGGTGTTGAAGTGTATCCAGGTTTTGCTGCTAGTGAGgtatcatcag ... aatcaaatagTTACAGGAGTCGCAACCAATGATGTTGGTATTGCTAAGGATGGTACCAAAA
ctaatatctctctgaattcttctctaacagatactttatgatgaaaatcaaatagTTACAGGAGTCGCAACCAATGATGTTGGTATTGCTAAGGATGGTACCAAAAGGGAAACTTTTCAACCTGGTGTAGAACTAAGAG
ctctaac putative branch site (score: 2)
tttatgatgaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcatcagtattcattttagaaacccttatgtggaaggactaatatctctctgaattcttctctaacagatactttatgatgaaaatcaaatagTTACAGGAGTCGCAACCAATGATGTTGGTATTGCTAAGGATGGTACCAAAAGGGAAACTTTTCAACCTGGTGTAGAACTAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG