1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttccgtgacctttacgcgatgttaacactgcttcagaaccatgaactgaagcagaatgtattgtataacattgttactgatttaatgtttgttcgagcagGAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAGATCAACAACTGGTTCATCAACCAGAGGAAACGGCACTGGAAGCCATCGG
species | Zea mays |
transcript | GRMZM2G028041_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGTGGCCGTACCCTTCA GAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAGEST: gi|211105912|gb|FK984438.1|FK984438
genomic: AAGTGGCCGTACCCTTCAgtaagatata ... gttcgagcagGAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAG
EST: AGAAACTCCTCCACTGGTGGGAGCTGCACTACAAGTGGCCGTACCCTTCA GAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAGEST: gi|60393930|gb|DN226800.1|DN226800
genomic: AGAAACTCCTCCACTGGTGGGAGCTGCACTACAAGTGGCCGTACCCTTCAgtaagatata ... gttcgagcagGAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAG
EST: AGAAACTCCTCCACTGGTGGGAGCTGCACTACAAGTGGCCGTACCCTTCA GAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAGEST: gi|211255945|gb|FL455104.1|FL455104
genomic: AGAAACTCCTCCACTGGTGGGAGCTGCACTACAAGTGGCCGTACCCTTCAgtaagatata ... gttcgagcagGAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAG
EST: AGAAACTCCTCCACTGGTGGGAGCTGCACTACAAGTGGCCGTACCCTTCA GAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAGEST: gi|50329611|gb|CO524737.1|CO524737
genomic: AGAAACTCCTCCACTGGTGGGAGCTGCACTACAAGTGGCCGTACCCTTCAgtaagatata ... gttcgagcagGAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAG
EST: AGAAACTCCTCCACTGGTGGGAGCTGCACTACAAGTGGCCGTACCCTTCA GAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAGEST: gi|60355037|gb|DN222010.1|DN222010
genomic: AGAAACTCCTCCACTGGTGGGAGCTGCACTACAAGTGGCCGTACCCTTCAgtaagatata ... gttcgagcagGAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAG
EST: AGAAACTCCTCCACTGGTGGGAGCTGCACTACAAGTGGCCGTACCCTTCA GAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAGEST: gi|101396808|gb|EB820330.1|EB820330
genomic: AGAAACTCCTCCACTGGTGGGAGCTGCACTACAAGTGGCCGTACCCTTCAgtaagatata ... gttcgagcagGAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAG
EST: AGAAACTCCTCCACTGGTGGGAGCTGCACTACAAGTGGCCGTACCCTTCA GAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAGEST: gi|76286051|gb|DV025619.1|DV025619
genomic: AGAAACTCCTCCACTGGTGGGAGCTGCACTACAAGTGGCCGTACCCTTCAgtaagatata ... gttcgagcagGAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAG
EST: AGAAACTCCTCCACTGGTGGGAGCTGCACTACAAGTGGCCGTACCCTTCA GAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAGEST: gi|101389983|gb|EB816923.1|EB816923
genomic: AGAAACTCCTCCACTGGTGGGAGCTGCACTACAAGTGGCCGTACCCTTCAgtaagatata ... gttcgagcagGAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAG
EST: AGAAACTCCTCCACTGGTGGGAGCTGCACTACAAGTGGCCGTACCCTTCA GAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAGEST: gi|76931671|gb|DV172798.1|DV172798
genomic: AGAAACTCCTCCACTGGTGGGAGCTGCACTACAAGTGGCCGTACCCTTCAgtaagatata ... gttcgagcagGAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAG
EST: AGAAACTCCTCCACTGGTGGGAGCTGCACTACAAGTGGCCGTACCCTTCA GAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAGEST: gi|60345527|gb|DN212500.1|DN212500
genomic: AGAAACTCCTCCACTGGTGGGAGCTGCACTACAAGTGGCCGTACCCTTCAgtaagatata ... gttcgagcagGAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAG
EST: AGAAACTCCTCCACTGGTGGGAGCTGCACTACAAGTGGCCGTACCCTTCA GAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAGEST: gi|211220404|gb|FL437615.1|FL437615
genomic: AGAAACTCCTCCACTGGTGGGAGCTGCACTACAAGTGGCCGTACCCTTCAgtaagatata ... gttcgagcagGAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAG
EST: AGAAACTCCTCCACTGGTGGGAGCTGCACTACAAGTGGCCGTACCCTTCA GAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAGEST: gi|78073693|gb|DV502127.1|DV502127
genomic: AGAAACTCCTCCACTGGTGGGAGCTGCACTACAAGTGGCCGTACCCTTCAgtaagatata ... gttcgagcagGAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAG
EST: AGAAACTCCTCCACTGGTGGGAGCTGCACTACAAGTGGCCGTACCCTTCA GAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAGEST: gi|31910083|gb|CD651246.1|CD651246
genomic: AGAAACTCCTCCACTGGTGGGAGCTGCACTACAAGTGGCCGTACCCTTCAgtaagatata ... gttcgagcagGAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAG
EST: AGAAACTCCTCCACTGGTGGGAGCTGCACTACAAGTGGCCGTACCCTTCA GAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAGEST: gi|93013896|gb|EB639416.1|EB639416
genomic: AGAAACTCCTCCACTGGTGGGAGCTGCACTACAAGTGGCCGTACCCTTCAgtaagatata ... gttcgagcagGAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAG
EST: GGGAGCTGCACTACAAGTGGCCGTACCCTTCA GAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAGEST: gi|33098196|gb|CF058156.1|CF058156
genomic: GGGAGCTGCACTACAAGTGGCCGTACCCTTCAgtaagatata ... gttcgagcagGAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAG
EST: AGAAACTCCTCCACTGGTGGGAGCTGCACTACAAGTGGCCGTACCCTTCA GAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAGEST: gi|29544802|gb|CB605410.1|CB605410
genomic: AGAAACTCCTCCACTGGTGGGAGCTGCACTACAAGTGGCCGTACCCTTCAgtaagatata ... gttcgagcagGAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAG
EST: AGAAACTCCTCCACTGGTGGGAGCTGCACTACAAGTGGCCGTACCCTTCA GAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAGEST: gi|28873323|gb|CB329327.1|CB329327
genomic: AGAAACTCCTCCACTGGTGGGAGCTGCACTACAAGTGGCCGTACCCTTCAgtaagatata ... gttcgagcagGAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAG
EST: AGAAACTCCTCCACTGGTGGGAGCTGCACTACAAGTGGCCGTACCCTTCA GAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAGEST: gi|91052590|gb|EB163008.1|EB163008
genomic: AGAAACTCCTCCACTGGTGGGAGCTGCACTACAAGTGGCCGTACCCTTCAgtaagatata ... gttcgagcagGAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAG
EST: AGAAACTCCTCCACTGGTGGGAGCTGCACTACAAGTGGCCGTACCCTTCA GAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAGEST: gi|60341856|gb|DN208829.1|DN208829
genomic: AGAAACTCCTCCACTGGTGGGAGCTGCACTACAAGTGGCCGTACCCTTCAgtaagatata ... gttcgagcagGAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAG
EST: AGAAACTCCTCCACTGGTGGGAGCTGCACTACAAGTGGCCGTACCCTTCA GAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAGEST: gi|149100768|gb|EE186862.2|EE186862
genomic: AGAAACTCCTCCACTGGTGGGAGCTGCACTACAAGTGGCCGTACCCTTCAgtaagatata ... gttcgagcagGAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAG
EST: AGAAACTCCTCCACTGGTGGGAGCTGCACTACAAGTGGCCGTACCCTTCA GAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAGEST: gi|60339748|gb|DN206721.1|DN206721
genomic: AGAAACTCCTCCACTGGTGGGAGCTGCACTACAAGTGGCCGTACCCTTCAgtaagatata ... gttcgagcagGAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAG
EST: AGAAACTCCTCCACTGGTGGGAGCTGCACTACAAGTGGCCGTACCCTTCA GAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAGEST: gi|18661474|gb|BM501416.1|BM501416
genomic: AGAAACTCCTCCACTGGTGGGAGCTGCACTACAAGTGGCCGTACCCTTCAgtaagatata ... gttcgagcagGAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAG
EST: AGAAACTCCTCCACTGGTGGGAGCTGCACTACAAGTGGCCGTACCCTTCA GAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAGEST: gi|93013895|gb|EB639415.1|EB639415
genomic: AGAAACTCCTCCACTGGTGGGAGCTGCACTACAAGTGGCCGTACCCTTCAgtaagatata ... gttcgagcagGAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAG
EST: GGGAGCTGCACTACAAGTGGCCGTACCCTTCA GAGACGGAGAAGATTGCGGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAEST: gi|33095633|gb|CF055627.1|CF055627
genomic: GGGAGCTGCACTACAAGTGGCCGTACCCTTCAgtaagatata ... gttcgagcagGAGACGGAGAAGATTGC-GCTCGCAGAATCAACGGGCCTAGACCAGAAGCA
EST: AGAAACTCCTCCACTGGTGGGAGCTGCACTACAAGTGGCCGTACCCTTCA GAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAGEST: gi|60395483|gb|DN228353.1|DN228353
genomic: AGAAACTCCTCCACTGGTGGGAGCTGCACTACAAGTGGCCGTACCCTTCAgtaagatata ... gttcgagcagGAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAG
EST: AGAAACTCCTCCACTGGTGGGAGCTGCACTACAAGTGGCCGTACCCTTCA GAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAGEST: gi|71763226|gb|DR961163.1|DR961163
genomic: AGAAACTCCTCCACTGGTGGGAGCTGCACTACAAGTGGCCGTACCCTTCAgtaagatata ... gttcgagcagGAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAG
EST: AGAAACTCCTCCACTGGTGGGAGCTGCACTACAAGTGGCCGTACCCTTCA GAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAGEST: gi|78075576|gb|DV504010.1|DV504010
genomic: AGAAACTCCTCCACTGGTGGGAGCTGCACTACAAGTGGCCGTACCCTTCAgtaagatata ... gttcgagcagGAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAG
EST: AGAAACTCCTCCACTGGTGGGAGCTGCACTACAAGTGGCCGTACCCTTCA GAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAGEST: gi|101395432|gb|EB819644.1|EB819644
genomic: AGAAACTCCTCCACTGGTGGGAGCTGCACTACAAGTGGCCGTACCCTTCAgtaagatata ... gttcgagcagGAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAG
EST: AGAAACTCCTCCACTGGTGGGAGCTGCACTCCAAGTGGCCGTACCCTTCA GAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAGEST: gi|33096939|gb|CF056899.1|CF056899
genomic: AGAAACTCCTCCACTGGTGGGAGCTGCACTACAAGTGGCCGTACCCTTCAgtaagatata ... gttcgagcagGAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAG
EST: AGAAACTCCTCCACTGGTGGGAGCTGCACTACAAGTGGCCGTACCCTTCA GAGACGGAGAAGATTGCGCTCGCAGAATCATCGGGCCTAGACCAGAAGCAG
genomic: AGAAACTCCTCCACTGGTGGGAGCTGCACTACAAGTGGCCGTACCCTTCAgtaagatata ... gttcgagcagGAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAG
ctgaagcagaatgtattgtataacattgttactgatttaatgtttgttcgagcagGAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAGATCAACAACTGGTTCATCAACCAGAGGAAACGGCACTGGAAGCCATCGG
tttgttc CT-rich tract
aatgtattgtataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttccgtgacctttacgcgatgttaacactgcttcagaaccatgaactgaagcagaatgtattgtataacattgttactgatttaatgtttgttcgagcagGAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAGATCAACAACTGGTTCATCAACCAGAGGAAACGGCACTGGAAGCCATCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - -ctgcttc
- - - - - - - - - - - - - - - - - - - ccatgaa
- - - - - - - - - - - - - - - - - - - - - - -ctgaagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttact