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gtataaaacacgagattgtaatctaattagttgaacaagttgggctagatcagtgtttgtcctatattgatttctgtacatggattttcacagATGATGGAGGCGGCATGGATCCTGAAGGTGTCCGTCGATGCATGAGTTTAGGATTCTCAACCAAGAAATCTAAGACCACTATTGGCCAGT
species | Zea mays |
transcript | GRMZM2G021864_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGATAAAAGCATCAATTTGAAAGACAATAGCTCAATGCTAGTTTTCCAAG ATGATGGAGGCGGCATGGATCCTGAAGGTGTCCGTCGATGCATGAGEST: gi|211115768|gb|FL233282.1|FL233282
genomic: TGATAAAAGCATCAATTTGAAAGACAATAGCTCAATGCTAGTTTTCCAAGgtataaaaca ... attttcacagATGATGGAGGCGGCATGGATCCTGAAGGTGTCCGTCGATGCATGAG
EST: TGATAAAAGCATCAATTTGAAAGACAATAGCTCAATGCTAGTTTTCCAAG ATGATGGAGGCGGCATGGATCCTGAAGGTGTCCGTCGATGCATGAGTTTAGEST: gi|211356582|gb|FL434528.1|FL434528
genomic: TGATAAAAGCATCAATTTGAAAGACAATAGCTCAATGCTAGTTTTCCAAGgtataaaaca ... attttcacagATGATGGAGGCGGCATGGATCCTGAAGGTGTCCGTCGATGCATGAGTTTAG
EST: TGATAAAAGCATCAATTTGAAAGACAATAGCTCAATGCTAGTTTTCCAAG ATGATGGAGGCGGCATGGATCCTGAAGGTGTCCGTCGATGCATGAGTTTAG
genomic: TGATAAAAGCATCAATTTGAAAGACAATAGCTCAATGCTAGTTTTCCAAGgtataaaaca ... attttcacagATGATGGAGGCGGCATGGATCCTGAAGGTGTCCGTCGATGCATGAGTTTAG
gttgggctagatcagtgtttgtcctatattgatttctgtacatggattttcacagATGATGGAGGCGGCATGGATCCTGAAGGTGTCCGTCGATGCATGAGTTTAGGATTCTCAACCAAGAAATCTAAGACCACTATTGGCCAGT
tattgat putative branch site (score: 93)
ttttcac putative PPT
tatattgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataaaacacgagattgtaatctaattagttgaacaagttgggctagatcagtgtttgtcctatattgatttctgtacatggattttcacagATGATGGAGGCGGCATGGATCCTGAAGGTGTCCGTCGATGCATGAGTTTAGGATTCTCAACCAAGAAATCTAAGACCACTATTGGCCAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA