1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ataaatcattttccttcacttgccattctgagtagattgcaatccaaataaggaatcatgttgatgctaacaattttttcctctccttttaatataacagGCCTTCCCCAAAGCGAATTGAAGGTCCAAATGGAAGAACTCTGCAACTCGAATTCCGAACAAGGCTGTCACTTCCCCTTTTTACTGGAGGAAAAGTTGAA
species | Zea mays |
transcript | GRMZM2G018837_T04 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAG GCCTTCCCCAAAGCGAATTGAAGGTCCAAATGGAAGAACTCTGCAACTCGAEST: gi|149000276|gb|EE037432.2|EE037432
genomic: GAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAGgtaagctatt ... aatataacagGCCTTCCCCAAAGCGAATTGAAGGTCCAAATGGAAGAACTCTGCAACTCGA
EST: GAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAG GCCTTCCCCAAAGCGAATTGAAGGTCCAAATGGAAGAACTCTGCAACTCGAEST: gi|149075355|gb|EE163864.2|EE163864
genomic: GAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAGgtaagctatt ... aatataacagGCCTTCCCCAAAGCGAATTGAAGGTCCAAATGGAAGAACTCTGCAACTCGA
EST: GAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAG GCCTTCCCCAAAGCGAATTGAAGGTCCAAATGGAAGAACTCTGCAACTCGAEST: gi|149014700|gb|EE044372.2|EE044372
genomic: GAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAGgtaagctatt ... aatataacagGCCTTCCCCAAAGCGAATTGAAGGTCCAAATGGAAGAACTCTGCAACTCGA
EST: GAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAG GCCTTCCCCAAAGCGAATTGAAGGTCCAAATGGAAGAACTCTGCAACTCGAEST: gi|76910443|gb|DV163876.1|DV163876
genomic: GAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAGgtaagctatt ... aatataacagGCCTTCCCCAAAGCGAATTGAAGGTCCAAATGGAAGAACTCTGCAACTCGA
EST: GAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAG GCCTTCCCCAAAGCGAATTGAAGGTCCAAATGGAAGAACTCTGCAACTCGAEST: gi|148956501|gb|EC902338.2|EC902338
genomic: GAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAGgtaagctatt ... aatataacagGCCTTCCCCAAAGCGAATTGAAGGTCCAAATGGAAGAACTCTGCAACTCGA
EST: GAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAG GCCTTCCCCAAAGCGAATTGAAGGTCCAAATGGAAGAACTCTGCAACTCGAEST: gi|26557412|gb|CA829647.1|CA829647
genomic: GAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAGgtaagctatt ... aatataacagGCCTTCCCCAAAGCGAATTGAAGGTCCAAATGGAAGAACTCTGCAACTCGA
EST: GAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAG GCCTTCCCCAAAGCGAATTGAAGGTCCAAATGGAAGAACTCTGCAACTCGA
genomic: GAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAGgtaagctatt ... aatataacagGCCTTCCCCAAAGCGAATTGAAGGTCCAAATGGAAGAACTCTGCAACTCGA
aaataaggaatcatgttgatgctaacaattttttcctctccttttaatataacagGCCTTCCCCAAAGCGAATTGAAGGTCCAAATGGAAGAACTCTGCAACTCGAATTCCGAACAAGGCTGTCACTTCCCCTTTTTACTGGAGGAAAAGTTGAA
ttttttcctctccttt CT-rich tract
ttttaatataaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataaatcattttccttcacttgccattctgagtagattgcaatccaaataaggaatcatgttgatgctaacaattttttcctctccttttaatataacagGCCTTCCCCAAAGCGAATTGAAGGTCCAAATGGAAGAACTCTGCAACTCGAATTCCGAACAAGGCTGTCACTTCCCCTTTTTACTGGAGGAAAAGTTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA