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gtatgtcagtaactgagtggtttctaacattattcttaatatatttttgttagtttattatatgtcatgacaactatctagctatcccattctgaagtcttcctttcttttccaaatagTGTCAGGCTGTTAGTGAGGAGGAGATACATGCCGTGTTATCAGAGCAGTCACTTTATCCTGCAGGGTGGATTCAT
species | Zea mays |
transcript | GRMZM2G013625_T04 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATTTTGTCACGATGTTGATTATACCAAAGCAAGAAGGAACTGCTCACTCA TGTCAGGCTGTTAGTGAGGAGGAGATACATGCCGTGTTATCAGAGCAGTCAEST: gi|71426234|gb|DR807284.1|DR807284
genomic: ATTTTGTCACGATGTTGATTATACCAAAGCAAGAAGGAACTGCTCACTCAgtatgtcagt ... ttccaaatagTGTCAGGCTGTTAGTGAGGAGGAGATACATGCCGTGTTATCAGAGCAGTCA
EST: ATTTTGTCACGATGTTGATTATACCAAAGCAAGAAGGAACTGCTCACTCA TGTCAGGCTGTTAGTGAGGAGGAGATACATGCCGTGTTATCAGAGCAGTCAEST: gi|71767635|gb|DR965572.1|DR965572
genomic: ATTTTGTCACGATGTTGATTATACCAAAGCAAGAAGGAACTGCTCACTCAgtatgtcagt ... ttccaaatagTGTCAGGCTGTTAGTGAGGAGGAGATACATGCCGTGTTATCAGAGCAGTCA
EST: ATTTTGTCACGATGTTGATTATACCAAAGCAAGAAGGAACTGCTCACTCA GEST: gi|71767635|gb|DR965572.1|DR965572
genomic: ATTTTGTCACGATGTTGATTATACCAAAGCAAGAAGGAACTGCTCACTCAgtatgtcagt ... ttccaaatag-
EST: ATTTTGTCACGATGTTGATTATACCAAAGCAAGAAGGAACTGCTCACTCA GEST: gi|91053085|gb|EB163503.1|EB163503
genomic: ATTTTGTCACGATGTTGATTATACCAAAGCAAGAAGGAACTGCTCACTCAgtatgtcagt ... ttccaaatag-
EST: ATTTTGTCACGATGTTGATTATACCAAAGCAAGAAGGAACTGCTCACTCA TGTCAGGCTGTTAGTGAGGAGGAGATACATGCCGTGTTATCAGAGCAGTCA
genomic: ATTTTGTCACGATGTTGATTATACCAAAGCAAGAAGGAACTGCTCACTCAgtatgtcagt ... ttccaaatagTGTCAGGCTGTTAGTGAGGAGGAGATACATGCCGTGTTATCAGAGCAGTCA
tcatgacaactatctagctatcccattctgaagtcttcctttcttttccaaatagTGTCAGGCTGTTAGTGAGGAGGAGATACATGCCGTGTTATCAGAGCAGTCACTTTATCCTGCAGGGTGGATTCAT
tcttcctttcttttcc CT-rich tract
tttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtcagtaactgagtggtttctaacattattcttaatatatttttgttagtttattatatgtcatgacaactatctagctatcccattctgaagtcttcctttcttttccaaatagTGTCAGGCTGTTAGTGAGGAGGAGATACATGCCGTGTTATCAGAGCAGTCACTTTATCCTGCAGGGTGGATTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA