1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tacctagttgcagctacatccaatctgagaactaagcacaacatttttatatagaaggaacaacatattttttgttcgttcacactatttttatgtgcagTTCTTCTGTGGCTGCTGACAGCAGCCTGCATCAAGACTGGTCGGCCACAGATGGCAAAACGTGCCATTGAGCTTGCTGAGTCGAGGCTGCTCAAGGACGG
species | Zea mays |
transcript | GRMZM2G007277_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGACCCCAAGAACACCCGGTGGAGTTACCACAATGGAGGATCGTGGCCAG TTCTTCTGTGGCTGCTGACAGCAGCCTGCATCAAGACTGGTCGGCCACAGAEST: gi|148935103|gb|EC879143.2|EC879143
genomic: TGACCCCAAGAACACCCGGTGGAGTTACCACAATGGAGGATCGTGGCCAGgtatcatctc ... ttatgtgcagTTCTTCTGTGGCTGCTGACAGCAGCCTGCATCAAGACTGGTCGGCCACAGA
EST: TGACCCCAAGAACACCCGGTGGAGTTACCACAATGGAGGATCGTGGCCAG TTCTTCTGTGGCTGCTGACAGCAGCCTGCATCAAGACTGGTCGGCCACAGAEST: gi|86465935|gb|DY232308.1|DY232308
genomic: TGACCCCAAGAACACCCGGTGGAGTTACCACAATGGAGGATCGTGGCCAGgtatcatctc ... ttatgtgcagTTCTTCTGTGGCTGCTGACAGCAGCCTGCATCAAGACTGGTCGGCCACAGA
EST: TGACCCCAAGAACACCCGGTGGAGTTACCACAATGGAGGATCGTGGCCAG TTCTTCTGTGGCTGCTGACAGCAGCCTGCATCAAGACTGGTCGGCCACAGAEST: gi|76925671|gb|DV170543.1|DV170543
genomic: TGACCCCAAGAACACCCGGTGGAGTTACCACAATGGAGGATCGTGGCCAGgtatcatctc ... ttatgtgcagTTCTTCTGTGGCTGCTGACAGCAGCCTGCATCAAGACTGGTCGGCCACAGA
EST: TGACCCCAAGAACACCCGGTGGAGTTACCACAATGGAGGATCGTGGCCAG TTCTTCTGTGGCTGCTGACAGCAGCCTGCATCAAGACTGGTCGGCCACAGAEST: gi|71762061|gb|DR959998.1|DR959998
genomic: TGACCCCAAGAACACCCGGTGGAGTTACCACAATGGAGGATCGTGGCCAGgtatcatctc ... ttatgtgcagTTCTTCTGTGGCTGCTGACAGCAGCCTGCATCAAGACTGGTCGGCCACAGA
EST: TGACCCCAAGAACACCCGGTGGAGTTACCACAATGGAGGATCGTGGCCAG TTCTTCTGTGGCTGCTGACAGCAGCCTGCATCAAGACTGGTCGGCCACAGA
genomic: TGACCCCAAGAACACCCGGTGGAGTTACCACAATGGAGGATCGTGGCCAGgtatcatctc ... ttatgtgcagTTCTTCTGTGGCTGCTGACAGCAGCCTGCATCAAGACTGGTCGGCCACAGA
tttatatagaaggaacaacatattttttgttcgttcacactatttttatgtgcagTTCTTCTGTGGCTGCTGACAGCAGCCTGCATCAAGACTGGTCGGCCACAGATGGCAAAACGTGCCATTGAGCTTGCTGAGTCGAGGCTGCTCAAGGACGG
ctattttt CT-rich tract
aacaacatatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacctagttgcagctacatccaatctgagaactaagcacaacatttttatatagaaggaacaacatattttttgttcgttcacactatttttatgtgcagTTCTTCTGTGGCTGCTGACAGCAGCCTGCATCAAGACTGGTCGGCCACAGATGGCAAAACGTGCCATTGAGCTTGCTGAGTCGAGGCTGCTCAAGGACGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - gttgcag
- - - - - - -ctacatc
- - - - - - - - - - - - - - gaactaa
- - - - - - - - - - - - - - - - - - cacaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caacata