1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagtttgcaagatatctgtggcgttgctaaatttttttcccttagtggggaagtcggaatctgaagacctgaaccaagtttgatttacttttcaaagGCAAGAATCCAGATAGCAGAGTTGAAATGTTACCCATGGATTTATCAGCTGGTGAAGAATCTCTGAAAGAAGTCGTACATGTGGCAGAATCATTTTTTTC
species | Zea mays |
transcript | GRMZM2G003692_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATCTGCACGTAACAAGGACGCGCTTGCGAGAGTGNNNNNNNNCATCCTCA GCAAGAATCCAGATAGCAGAEST: gi|211174932|gb|FL421412.1|FL421412
genomic: ATCTGCACGTAACAAGGACGCGCTTGCGAGAGTGAAAAAAAACATCCTCAgtaagtttgc ... cttttcaaagGCAAGAATCCAGATAGCAGA
EST: ATCTGCACGTAACAAGGACGCGCTTGCGAGAGTGAAAAANAACATCCTCA GCAAGAATCCAGATAGEST: gi|211280391|gb|FL376816.1|FL376816
genomic: ATCTGCACGTAACAAGGACGCGCTTGCGAGAGTGAAAAAAAACATCCTCAgtaagtttgc ... cttttcaaagGCAAGAATCCAGATAG
EST: ATCTGCACGTAACAAGGACGCGCTTGCGAGAGTGNNNNNNNNCATCCTCA GCAAGAATCCAGATAGCAGAGTTGAAATGTTACCCATGGATTTATCAGCTGEST: gi|211267130|gb|FL426696.1|FL426696
genomic: ATCTGCACGTAACAAGGACGCGCTTGCGAGAGTGAAAAAAAACATCCTCAgtaagtttgc ... cttttcaaagGCAAGAATCCAGATAGCAGAGTTGAAATGTTACCCATGGATTTATCAGCTG
EST: ATCTGCACGTAACAAGGACGCGCTTGCGAGAGTGNNNNNNNNCATCCTCA GCAAGAATCCAGATAGCAGAGTTGAAATGTTACCCATGGATTTATCAGCTGEST: gi|211126709|gb|FL428259.1|FL428259
genomic: ATCTGCACGTAACAAGGACGCGCTTGCGAGAGTGAAAAAAAACATCCTCAgtaagtttgc ... cttttcaaagGCAAGAATCCAGATAGCAGAGTTGAAATGTTACCCATGGATTTATCAGCTG
EST: ATCTGCACGTAACAAGGACGCGCTTGCGAGAGTGNNNNNNNNCATCCTCA GCAAGAATCCAGATAGCAGAGTTGAAATGTTACCCATGGATTTATCAGCTGEST: gi|211245303|gb|FL400469.1|FL400469
genomic: ATCTGCACGTAACAAGGACGCGCTTGCGAGAGTGAAAAAAAACATCCTCAgtaagtttgc ... cttttcaaagGCAAGAATCCAGATAGCAGAGTTGAAATGTTACCCATGGATTTATCAGCTG
EST: ATCTGCACGTAACAAGGACGCGCTTGCGAGAGTGNNNNNNNNCATCCTCA GCAAGAATCCAGATAGCAGATTTGAAATGTTACCCATGEST: gi|211070635|gb|FL369038.1|FL369038
genomic: ATCTGCACGTAACAAGGACGCGCTTGCGAGAGTGAAAAAAAACATCCTCAgtaagtttgc ... cttttcaaagGCAAGAATCCAGATAGCAGAGTTGAAATGTTACCCATG
EST: ATCTGCACGTAACAAGGACGCGCTTGCGAGAGTGNNNNNNNNCATCCTCA GCAAGAATCCAGATAGCAGAGTTGAAATGTTACC-ATGGAEST: gi|32919174|gb|CF023986.1|CF023986
genomic: ATCTGCACGTAACAAGGACGCGCTTGCGAGAGTGAAAAAAAACATCCTCAgtaagtttgc ... cttttcaaagGCAAGAATCCAGATAGCAGAGTTGAAATGTTACCCATGGA
EST: ATCTGCACGTAACAAGGACGCACTTGCGAGAGTGNNNNNNNNCATCCTCA GCAAGAATCCAGATAGCAGAGTTGAAATGTTACCCATGGATTTATCAGCTG
genomic: ATCTGCACGTAACAAGGACGCGCTTGCGAGAGTGAAAAAAAACATCCTCAgtaagtttgc ... cttttcaaagGCAAGAATCCAGATAGCAGAGTTGAAATGTTACCCATGGATTTATCAGCTG
tagtggggaagtcggaatctgaagacctgaaccaagtttgatttacttttcaaagGCAAGAATCCAGATAGCAGAGTTGAAATGTTACCCATGGATTTATCAGCTGGTGAAGAATCTCTGAAAGAAGTCGTACATGTGGCAGAATCATTTTTTTC
gtttgat putative branch site (score: 5)
tttacttttc CT-rich tract
tttgatttactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttgcaagatatctgtggcgttgctaaatttttttcccttagtggggaagtcggaatctgaagacctgaaccaagtttgatttacttttcaaagGCAAGAATCCAGATAGCAGAGTTGAAATGTTACCCATGGATTTATCAGCTGGTGAAGAATCTCTGAAAGAAGTCGTACATGTGGCAGAATCATTTTTTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT