Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataactgtgattcatctgttgctaacttttctcttggtgttgattcaagttttgaatgaaattttatgcctccattgcagTCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACAAGGTTGATGCTTTTGGTGAGAAGGCTATGATCGAACTGAAGAAGTATTA

Basic information

species Zea mays
transcript GRMZM2G002786_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G002786_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g53520.1 (Oryza sativa), 3'ss of exon 4
gtaataactgtgattcatctgttgctaacttttctcttggtgtt-gattcaagttttgaatgaaattttat--gcctccattgcagTCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACAAGGTTGATGCTTTTGGTGAGAAGGCTATGATCGAACTGAAGAAGTATTA
||||| |      | | |  |  ||| |  |||  |    | || ||| |||||||  ||  |  |||| |  |     | |||||| |||||||| || |||||| | || || ||||||||||| ||||||||||||||||||||||||||||||||||||  ||| ||| | |||||||| ||
gtaatgataccagtgc-tgcgaagcttaagtttggcaaactatttgatacaagtttataacaacctttttttggggctgaatgcagTTTTTGTGGCGCTCTACACTGTGCCAGTACTGTATGAGAAGTATGAGGACAAGGTTGATGCTTTTGGTGAGAAGGCTGAGATTGAATTTAAGAAGTACTA

upper sequence: GRMZM2G002786_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA20G30340.1 (Glycine max), 3'ss of exon 4
--------------gtaataactgtgattcat-ctgttgctaacttttctcttggtgt-tgattcaagttttg----aatgaaatttta-------tgcctccatt---------gcagTCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACAAGGTTGATGCTTTTGGTGAGAAGGCTATGATCGAACTGAAGAAGTATTA
               | ||  ||   |||| | |  ||| ||  | |  |  || | | |||||  |    |     ||||  |||||        ||  ||||||          ||||||||||| |||||| |||  | ||  | ||||||||||||||||| ||| |||||||||| || ||||||||||| ||||| ||  | || ||| | ||
gtaagacttcatgcatcattgctcccattctttccattgttacgtgtctttatgttctatgattagaaggctatattaatggtattttcctaacactgaatccatttgggatgatacagTCTTTGTGTCACTGTTCACATTGCCACTGCTGTATGAGAAATATGAAGACCAGGTTGATGCATTAGGTGAGAAGGCAATGATTGAGATCAAAAAGCAGTA

upper sequence: GRMZM2G002786_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA10G37400.1 (Glycine max), 3'ss of exon 4
-------------gtaataactgtgattcatctgttgctaacttttctcttggtgt-tgattcaagt----tttgaatgaaatttta-------tgcctccatt---------gcagTCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACAAGGTTGATGCTTTTGGTGAGAAGGCTATGATCGAACTGAAGAAGTATTA
              || ||  |    |   ||  ||| ||  | |  |  || | | | ||| ||      ||| ||||  |||||        ||  ||||||          |||| |||||| |||||| |||  | ||  | ||||||||||||||||| ||| | |||||||| || || |||||||| ||||| ||| | || ||| | ||
gtaagaaatgcatatattacttccattctttccattgttacgtgtctttatgttctataattaaaaggctattttaatggtattttcctaacattgaatccatttggggtgatacagTTTTTGTGTCACTGTTCACGTTGCCACTGCTGTATGAGAAATATGAAGACCAAGTTGATGCATTAGGAGAGAAGGCAATGATTGAAATCAAAAAGCAGTA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78074111|gb|DV502545.1|DV502545
EST:     CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
genomic: CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTGgtaataactg ... tccattgcagTCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
EST: gi|32848367|gb|CD988048.1|CD988048
EST:     CCTTTCAGTTCTTGGGAGCTGCTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTAC
genomic: CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTGgtaataactg ... tccattgcagTCTTTGTGGCACTGTAC
EST: gi|94477185|gb|EB706143.1|EB706143
EST:     CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAA-TATGAGGACA
genomic: CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTGgtaataactg ... tccattgcagTCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
EST: gi|74244054|gb|DT651968.1|DT651968
EST:     CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
genomic: CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTGgtaataactg ... tccattgcagTCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
EST: gi|148928699|gb|EC873319.2|EC873319
EST:     CTTTTCAGTTCTTGGGAGCGGTGGCAACTTCCTGCCACTGTTCTATATTG                         TTTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
genomic: CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTGgtaataactg ... tccattgcagTCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
EST: gi|86469370|gb|DY235740.1|DY235740
EST:     CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTTTATATTG                         TCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
genomic: CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTGgtaataactg ... tccattgcagTCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
EST: gi|111190365|gb|EE288501.1|EE288501
EST:     CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
genomic: CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTGgtaataactg ... tccattgcagTCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
EST: gi|148997316|gb|EE035811.2|EE035811
EST:     CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
genomic: CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTGgtaataactg ... tccattgcagTCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
EST: gi|83279394|gb|DV943402.1|DV943402
EST:     CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
genomic: CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTGgtaataactg ... tccattgcagTCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
EST: gi|78088623|gb|DV517016.1|DV517016
EST:     CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
genomic: CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTGgtaataactg ... tccattgcagTCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
EST: gi|148982478|gb|EE028331.2|EE028331
EST:     CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
genomic: CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTGgtaataactg ... tccattgcagTCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
EST: gi|113702550|gb|EE680054.1|EE680054
EST:     CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
genomic: CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTGgtaataactg ... tccattgcagTCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
EST: gi|18179914|gb|BM381124.1|BM381124
EST:     CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
genomic: CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTGgtaataactg ... tccattgcagTCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
EST: gi|148958637|gb|EC904892.2|EC904892
EST:     CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTTTATATTG                         TTTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
genomic: CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTGgtaataactg ... tccattgcagTCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
EST: gi|149072488|gb|EE160766.2|EE160766
EST:     CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
genomic: CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTGgtaataactg ... tccattgcagTCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
EST: gi|149103132|gb|EE288502.2|EE288502
EST:     CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
genomic: CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTGgtaataactg ... tccattgcagTCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
EST: gi|60350462|gb|DN217435.1|DN217435
EST:     CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
genomic: CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTGgtaataactg ... tccattgcagTCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
EST: gi|5740048|gb|AI947738.1|AI947738
EST:     CACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
genomic: CACTGTTCTATATTGgtaataactg ... tccattgcagTCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
EST: gi|78088622|gb|DV517015.1|DV517015
EST:     CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
genomic: CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTGgtaataactg ... tccattgcagTCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
EST: gi|211119893|gb|FL474006.1|FL474006
EST:     CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
genomic: CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTGgtaataactg ... tccattgcagTCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
EST: gi|148946603|gb|EC891862.2|EC891862
EST:     CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
genomic: CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTGgtaataactg ... tccattgcagTCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
EST: gi|89764135|gb|DY691052.1|DY691052
EST:     TTTTCAGTTCTTGGGAGCTGTTTGCA-CTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
genomic: TTTTCAGTTCTTGGGAGCTGTT-GCAACTTCCTGACACTGTTCTATATTGgtaataactg ... tccattgcagTCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
EST: gi|33103770|gb|CF063730.1|CF063730
EST:     CCTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGT
genomic: CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTGgtaataactg ... tccattgcagTCTTTGTGGCACTGT
EST: gi|148958638|gb|EC904893.2|EC904893
EST:     CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
genomic: CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTGgtaataactg ... tccattgcagTCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
EST: gi|149017012|gb|EE045663.2|EE045663
EST:     CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
genomic: CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTGgtaataactg ... tccattgcagTCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
EST: gi|110218442|gb|EC900340.1|EC900340
EST:     CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
genomic: CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTGgtaataactg ... tccattgcagTCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
EST: gi|113703563|gb|EE681067.1|EE681067
EST:     CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
genomic: CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTGgtaataactg ... tccattgcagTCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
EST: gi|60397846|gb|DN230662.1|DN230662
EST:     CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
genomic: CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTGgtaataactg ... tccattgcagTCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
EST: gi|89764133|gb|DY691051.1|DY691051
EST:     CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
genomic: CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTGgtaataactg ... tccattgcagTCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
EST: gi|148965585|gb|EE016418.2|EE016418
EST:     CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
genomic: CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTGgtaataactg ... tccattgcagTCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
EST: gi|84969593|gb|DW468025.1|DW468025
EST:     CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
genomic: CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTGgtaataactg ... tccattgcagTCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
EST: gi|91052894|gb|EB163312.1|EB163312
EST:     CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACC
genomic: CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTGgtaataactg ... tccattgcagTCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
EST: gi|32830319|gb|CD969997.1|CD969997
EST:     CCTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGT
genomic: CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTGgtaataactg ... tccattgcagTCTTTGTGGCACTGT
EST: gi|40334051|gb|CK368121.1|CK368121
EST:     CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
genomic: CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTGgtaataactg ... tccattgcagTCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
EST: gi|211478240|gb|FL012834.1|FL012834
EST:     CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTG                         G
genomic: CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTGgtaataactg ... tccattgcag-
EST: gi|211478240|gb|FL012834.1|FL012834
EST:     CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTG                         G
genomic: CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTGgtaataactg ... tccattgcag-
EST: gi|76013338|gb|DT940508.1|DT940508
EST:     CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
genomic: CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTGgtaataactg ... tccattgcagTCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
EST: gi|148954864|gb|EC900341.2|EC900341
EST:     CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
genomic: CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTGgtaataactg ... tccattgcagTCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
EST: gi|86468402|gb|DY234772.1|DY234772
EST:     CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
genomic: CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTGgtaataactg ... tccattgcagTCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
EST: gi|76285736|gb|DV025304.1|DV025304
EST:     CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
genomic: CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTGgtaataactg ... tccattgcagTCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
EST: gi|78078652|gb|DV507064.1|DV507064
EST:     CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
genomic: CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTGgtaataactg ... tccattgcagTCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
EST: gi|78074112|gb|DV502546.1|DV502546
EST:     CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
genomic: CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTGgtaataactg ... tccattgcagTCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
EST: gi|86470508|gb|DY236878.1|DY236878
EST:     CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
genomic: CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTGgtaataactg ... tccattgcagTCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
EST: gi|78078655|gb|DV507067.1|DV507067
EST:     CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
genomic: CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTGgtaataactg ... tccattgcagTCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
EST: gi|33102912|gb|CF062872.1|CF062872
EST:     CCTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTAC
genomic: CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTGgtaataactg ... tccattgcagTCTTTGTGGCACTGTAC
EST: gi|148930882|gb|EC873320.2|EC873320
EST:     CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTG                         TCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA
genomic: CTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTGgtaataactg ... tccattgcagTCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 207

GTTATCGCAGGTCTCTGGCTCTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTGgtaataactg ... tccattgcagTCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACAAGGTTGATGCTTTTGGTGAGAAGGCTATGATCGAACTGAAGAAGTATTA


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 106

GTTATCGCAGGTCTCTGGCTCTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTGgtaataactg ... tccattgcagTCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACAAGGTTGATGCTTTTGGTGAGAAGGCTATGATCGAACTGAAGAAGTATTA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 104

GTTATCGCAGGTCTCTGGCTCTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTGgtaataactg ... tccattgcagTCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACAAGGTTGATGCTTTTGGTGAGAAGGCTATGATCGAACTGAAGAAGTATTA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 150

GTTATCGCAGGTCTCTGGCTCTTTTCAGTTCTTGGGAGCTGTTGCAACTTCCTGACACTGTTCTATATTGgtaataactg ... tccattgcagTCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACAAGGTTGATGCTTTTGGTGAGAAGGCTATGATCGAACTGAAGAAGTATTA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttctcttggtgttgattcaagttttgaatgaaattttatgcctccattgcagTCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACAAGGTTGATGCTTTTGGTGAGAAGGCTATGATCGAACTGAAGAAGTATTA
            tgttgat  putative branch site (score: 150)
                                           cctccatt  putative PPT
                     aagttttgaatgaaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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gtaataactgtgattcatctgttgctaacttttctcttggtgttgattcaagttttgaatgaaattttatgcctccattgcagTCTTTGTGGCACTGTACACTATACCTGTTCTGTATGAGAAATATGAGGACAAGGTTGATGCTTTTGGTGAGAAGGCTATGATCGAACTGAAGAAGTATTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT