1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tttaactgccaccctctatgtcttaagcaatttttatgcttcattagtataaacttgctgtcttatatgatgatatgaacccaacttcatttgtgtccagGTGTGGCAACATCAACTGGGCTAAGCGGACCAAATGTAATATATGTAACACCTCCAAGCCTGGTACCAATGAAGGTGGTGTGAG
species | Zea mays |
transcript | AC233865.1_FGT006 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTTGGTGGTCCACCTGGATTGTTTGGCCCGAATGATTGGCCATGTCCAAT GTGTGGCAACATCAACTGGGCTAAGCGGACCAAATGTAATATATGTAACAC
genomic: GTTGGTGGTCCACCTGGATTGTTTGGCCCGAATGATTGGCCATGTCCAATgtaagaggct ... ttgtgtccagGTGTGGCAACATCAACTGGGCTAAGCGGACCAAATGTAATATATGTAACAC
agtataaacttgctgtcttatatgatgatatgaacccaacttcatttgtgtccagGTGTGGCAACATCAACTGGGCTAAGCGGACCAAATGTAATATATGTAACACCTCCAAGCCTGGTACCAATGAAGGTGGTGTGAG
cttcattt CT-rich tract
ttatatgatgatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttaactgccaccctctatgtcttaagcaatttttatgcttcattagtataaacttgctgtcttatatgatgatatgaacccaacttcatttgtgtccagGTGTGGCAACATCAACTGGGCTAAGCGGACCAAATGTAATATATGTAACACCTCCAAGCCTGGTACCAATGAAGGTGGTGTGAG
- - actgcca
- - - - - - - - - - - - - - - - - - tgcttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacccaa