1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' | 30 5' 3' | 31 5' 3' | 32 5' 3' | 33 5' 3' | 34 5' 3' |
...atcatttcccagcctcagccactgggtctctgtcaaatgcttgagattaatgcagtgtttcacatgctatttttttgttctcttttgtggctatgaacagCAAGAGCTTGCTGCTGTCTTCAAGAAAATCGGCGACAAGCAAACATGTACTATTGGCTTCTACGAACTGTATCGGATAACTCAGCTCTACCCAAAG
species | Zea mays |
transcript | GRMZM2G009849_T01 |
intron # | 31 |
splice site | 3' |
intron type | U2 |
EST: CTTCAAACAATCCAAATCCATCTACTCACTCAGCAGACGCGCAATTGAAG CAAGAGCTTGCTGCTGTCTTCAEST: gi|12045716|gb|BF727855.1|BF727855
genomic: CTTCAAACAATCCAAATCCATCTACTCACTCAGCAGACGCGCAATTGAAGgtccgactgt ... ctatgaacagCAAGAGCTTGCTGCTGTCTTCA
EST: CTTCAAACAATCCAAATCCATCTACTCACTCAGCAGACGCGCAATTGAAG CAAGAGCTTGCTGCTGTCTTCAAGAAAATCGGCGACAAGCAAACATGTACTEST: gi|87152573|gb|DY397362.1|DY397362
genomic: CTTCAAACAATCCAAATCCATCTACTCACTCAGCAGACGCGCAATTGAAGgtccgactgt ... ctatgaacagCAAGAGCTTGCTGCTGTCTTCAAGAAAATCGGCGACAAGCAAACATGTACT
EST: CTTCAAACAATCCAAATCCATCTACTCACTCAGCAGACGCGCAATTGAAG CAAGAGCTTGCTGCTGTCTTCAAGEST: gi|67019308|gb|CO448057.1|CO448057
genomic: CTTCAAACAATCCAAATCCATCTACTCACTCAGCAGACGCGCAATTGAAGgtccgactgt ... ctatgaacagCAAGAGCTTGCTGCTGTCTTCAAG
EST: CTTCAAACAATCCAAATCCATCTACTCACTCAGCAGACGCGCAATTGAAG CAAGAGCTTGCTGCTGTCTTCAAGAAAATCGGCGACAAGCAAACATGTACTEST: gi|32851907|gb|CD991588.1|CD991588
genomic: CTTCAAACAATCCAAATCCATCTACTCACTCAGCAGACGCGCAATTGAAGgtccgactgt ... ctatgaacagCAAGAGCTTGCTGCTGTCTTCAAGAAAATCGGCGACAAGCAAACATGTACT
EST: CTTCAAACAATCCAAATCCATCTACTCACTCAGCAGACGCGCAATTGAAG CAAGAGCTTGCTGCTGTCTTCAAGAAAATCGGCGACAAGCAAACATGTACTEST: gi|19822797|gb|BQ048821.1|BQ048821
genomic: CTTCAAACAATCCAAATCCATCTACTCACTCAGCAGACGCGCAATTGAAGgtccgactgt ... ctatgaacagCAAGAGCTTGCTGCTGTCTTCAAGAAAATCGGCGACAAGCAAACATGTACT
EST: CTTCAAACAATCCAAATCCATCTACTCACTCAGCAGACGCGCAATTGAAG CAAGAGCTTGCTGCTGTCTTEST: gi|67011174|gb|CO439923.1|CO439923
genomic: CTTCAAACAATCCAAATCCATCTACTCACTCAGCAGACGCGCAATTGAAGgtccgactgt ... ctatgaacagCAAGAGCTTGCTGCTGTCTT
EST: CTTCAAACAATCCAAATCCATCTACTCACTCAGCAGACGCGCAATTGAAG CAAGAGCTTGCTGCTGTCTTCAAGAAAATCGGCGACAAGCAAACATGTACT
genomic: CTTCAAACAATCCAAATCCATCTACTCACTCAGCAGACGCGCAATTGAAGgtccgactgt ... ctatgaacagCAAGAGCTTGCTGCTGTCTTCAAGAAAATCGGCGACAAGCAAACATGTACT
attaatgcagtgtttcacatgctatttttttgttctcttttgtggctatgaacagCAAGAGCTTGCTGCTGTCTTCAAGAAAATCGGCGACAAGCAAACATGTACTATTGGCTTCTACGAACTGTATCGGATAACTCAGCTCTACCCAAAG
gattaat putative branch site (score: 3)
tatttttttgttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcatttcccagcctcagccactgggtctctgtcaaatgcttgagattaatgcagtgtttcacatgctatttttttgttctcttttgtggctatgaacagCAAGAGCTTGCTGCTGTCTTCAAGAAAATCGGCGACAAGCAAACATGTACTATTGGCTTCTACGAACTGTATCGGATAACTCAGCTCTACCCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC