1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tagtttggaggtctcaccatccaatgcataatcgtgtagtactgaactactgaaaagttccatttacctgcataacaggattttgtggccatttttctagGTTGTATTGGTGCGATTTGCCCCTGTTTCCTTTTTGGAAAGAATGCACAATTCTTGGGATCTGGAACTCTTGCTGGATCATGCACTACGCATTGCATGTT
species | Zea mays |
transcript | GRMZM5G892035_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGCCTGTTTTGATGACCCCCAGAGCT GTTGTATTGGTGCGATTTGCCCCTGTTTCCTTTTTGGAAAGAATGCACAATEST: gi|71765696|gb|DR963633.1|DR963633
genomic: GTGCCTGTTTTGATGACCCCCAGAGCTgtatgccact ... atttttctagGTTGTATTGGTGCGATTTGCCCCTGTTTCCTTTTTGGAAAGAATGCACAAT
EST: AACACAATGGTCATCTGGCATCTGTGCCTGTTTTGATGACCCCCAGAGCT GTTGTATTGGTGCGATTTGCCCCTGTTTCCTTTTTGGAAAGAATGCACAATEST: gi|71765695|gb|DR963632.1|DR963632
genomic: AACACAATGGTCATCTGGCATCTGTGCCTGTTTTGATGACCCCCAGAGCTgtatgccact ... atttttctagGTTGTATTGGTGCGATTTGCCCCTGTTTCCTTTTTGGAAAGAATGCACAAT
EST: TGTTTTGATGACCCCCAGAGCT GTTGTATT-GTGCGATTTGCCCCTGTTTCCTTTTTGGAAAGAATGCACAAT
genomic: TGTTTTGATGACCCCCAGAGCTgtatgccact ... atttttctagGTTGTATTGGTGCGATTTGCCCCTGTTTCCTTTTTGGAAAGAATGCACAAT
actactgaaaagttccatttacctgcataacaggattttgtggccatttttctagGTTGTATTGGTGCGATTTGCCCCTGTTTCCTTTTTGGAAAGAATGCACAATTCTTGGGATCTGGAACTCTTGCTGGATCATGCACTACGCATTGCATGTT
gcataac putative branch site (score: 3)
ccatttttct putative PPT
atttttcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagtttggaggtctcaccatccaatgcataatcgtgtagtactgaactactgaaaagttccatttacctgcataacaggattttgtggccatttttctagGTTGTATTGGTGCGATTTGCCCCTGTTTCCTTTTTGGAAAGAATGCACAATTCTTGGGATCTGGAACTCTTGCTGGATCATGCACTACGCATTGCATGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA