1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gtcttgttacataggcagaactgcaattatttaggaacagaggtagttctttgtccggactaaacaattaatgcatacccgcattgatttttcatcatagGACGTGGAGTACCAGTTTTGGAGTGGCCAGCTAGGGTTAAAATTGCGGCTGGTTCGGCTCGTGGAATAGCCTATCTTCACGAAGATT
species | Zea mays |
transcript | GRMZM5G872442_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCTTGTCTACGATTTTGTGCCCAACGACACACTTCACTATCATCTTCATG GACGTGGAGTACCAGTTTTGGAGTGGCCAGCTAGGGTTAAAATTGCGGCTGEST: gi|26559092|gb|CA831327.1|CA831327
genomic: GCTTGTCTACGATTTTGTGCCCAACGACACACTTCACTATCATCTTCATGgtatgctgtg ... ttcatcatagGACGTGGAGTACCAGTTTTGGAGTGGCCAGCTAGGGTTAAAATTGCGGCTG
EST: TTGTCTACGATTTTGGGGCCC-ACGAACACACTTCACTATCATCTTCATG GACGTGGAGTACCAGTTTTGGAGTGGCCAGCTAGGGTTAAAATTGCGGCTG
genomic: TTGTCTACGATTTT-GTGCCCAACG-ACACACTTCACTATCATCTTCATGgtatgctgtg ... ttcatcatagGACGTGGAGTACCAGTTTTGGAGTGGCCAGCTAGGGTTAAAATTGCGGCTG
gttctttgtccggactaaacaattaatgcatacccgcattgatttttcatcatagGACGTGGAGTACCAGTTTTGGAGTGGCCAGCTAGGGTTAAAATTGCGGCTGGTTCGGCTCGTGGAATAGCCTATCTTCACGAAGATT
tttttcatc CT-rich tract
actaaacaattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcttgttacataggcagaactgcaattatttaggaacagaggtagttctttgtccggactaaacaattaatgcatacccgcattgatttttcatcatagGACGTGGAGTACCAGTTTTGGAGTGGCCAGCTAGGGTTAAAATTGCGGCTGGTTCGGCTCGTGGAATAGCCTATCTTCACGAAGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - aactgca
- - - - - - - - - - - - - - - - - gaacaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatac