1 5' 3' | 2 5' 3' | 3 5' 3' |
gtatatccgacaaaaaaaaacaggctctgctaaatttgcagtatggtgttgagaaaaaaaataatttggtaaacctgtgtggcactacttttacatgcattgcagGTCAAGGAGCTTGGGATTTATTTTGCTGGTTGCCCACATATAGCAAAAACTGTGGAGGTCTATTTTCAAAACCTGTGGACGCTTTCAACCCTCAACTCAA
species | Zea mays |
transcript | GRMZM5G871154_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGGATGTGTATATAGGTTCCGCAAACAACGACTGGAAATCCCTTACTTAG GTCAAGGAGCTTGTGATTTATTTTGCTGGTTGCCCACAGATAGCAAAAACTEST: gi|149101041|gb|EE187139.2|EE187139
genomic: AGGATGTGTATATAGGTTCCGCAAACAACGACTGGAAATCCCTTACTCAGgtatatccga ... tgcattgcagGTCAAGGAGCTTGGGATTTATTTTGCTGGTTGCCCACATATAGCAAAAACT
EST: AGGATGTGTATATAGGTTCCGCAAACAACGACTGGAAATCCCTTACTCAG GTCAAGGAGCTTGGGATTTATTTTGCTGGTTGCCCACATATAGCAAAAACT
genomic: AGGATGTGTATATAGGTTCCGCAAACAACGACTGGAAATCCCTTACTCAGgtatatccga ... tgcattgcagGTCAAGGAGCTTGGGATTTATTTTGCTGGTTGCCCACATATAGCAAAAACT
gagaaaaaaaataatttggtaaacctgtgtggcactacttttacatgcattgcagGTCAAGGAGCTTGGGATTTATTTTGCTGGTTGCCCACATATAGCAAAAACTGTGGAGGTCTATTTTCAAAACCTGTGGACGCTTTCAACCCTCAACTCAA
aaaaaataatttggta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatccgacaaaaaaaaacaggctctgctaaatttgcagtatggtgttgagaaaaaaaataatttggtaaacctgtgtggcactacttttacatgcattgcagGTCAAGGAGCTTGGGATTTATTTTGCTGGTTGCCCACATATAGCAAAAACTGTGGAGGTCTATTTTCAAAACCTGTGGACGCTTTCAACCCTCAACTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG