1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaatgtttagtgtgaagttctcttgtaactgtatattatttatgtatcgagaattgtttgttgacatgaatcataacatcagacaggcctatgatttgctgttaatttatgttgctgagttcaaatattgttaattttcagGGAAAGGGACTATTGGTCGGTGCTGGAACACCCACCTAAGGATTTGGAGATTGCAATAGTGCAAGCAGAGCACAGTGATCGATGGGTCCCTGATGACGTT
species | Zea mays |
transcript | GRMZM5G831584_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACCTGGGCTTTCAATCTTCAGGCTGCCATAGACATGTTTAGTTCTTATAG GGAAAGGGACTATTGGTCGGTGCTGGAACACCCACCTAAGGATTTGGAGATEST: gi|211175354|gb|FL443070.1|FL443070
genomic: ACCTGGGCTTTCAATCTTCAGGCTGCCATAGACATGTTTAGTTCTTATAGgtaatgttta ... taattttcagGGAAAGGGACTATTGGTCGGTGCTGGAACACCCACCTAAGGATTTGGAGAT
EST: ACCTGGGCTTTCAATCTTCAGGCTGCCATAGACATGTTTAGTTCTTATAG GGAAAGGGACTATTGGTCGGTGCTGGAACACCCACCTAAGGATTTGGAGATEST: gi|76019610|gb|DT946780.1|DT946780
genomic: ACCTGGGCTTTCAATCTTCAGGCTGCCATAGACATGTTTAGTTCTTATAGgtaatgttta ... taattttcagGGAAAGGGACTATTGGTCGGTGCTGGAACACCCACCTAAGGATTTGGAGAT
EST: ACCTGGGCTTTCAATCTTCAGGCTGCCATAGACATGTTTAGTTCTTATAG GGAAAGGGACTATTGGTCGGTGCTGGAACACCCACCTAAGGATTTGGAGATEST: gi|78082358|gb|DV510770.1|DV510770
genomic: ACCTGGGCTTTCAATCTTCAGGCTGCCATAGACATGTTTAGTTCTTATAGgtaatgttta ... taattttcagGGAAAGGGACTATTGGTCGGTGCTGGAACACCCACCTAAGGATTTGGAGAT
EST: ACCTGGGCTTTCAATCTTCAGGCTGCCATAGACATGTTTAGTTTTTATAG GGAAAGGGACTATTGGTCGGTGCTGGAACACCCACCTAAGGATTTGGAGATEST: gi|211465673|gb|FL464805.1|FL464805
genomic: ACCTGGGCTTTCAATCTTCAGGCTGCCATAGACATGTTTAGTTCTTATAGgtaatgttta ... taattttcagGGAAAGGGACTATTGGTCGGTGCTGGAACACCCACCTAAGGATTTGGAGAT
EST: GCTTTCAATCTTCAGGCTGCCATAGATATGTTTAGTTCTTATAG GGAAAGGGACTATTGGTCGGTGCTGGAACACCCACCTAAGGATTTGGAGATEST: gi|60395624|gb|DN228494.1|DN228494
genomic: GCTTTCAATCTTCAGGCTGCCATAGACATGTTTAGTTCTTATAGgtaatgttta ... taattttcagGGAAAGGGACTATTGGTCGGTGCTGGAACACCCACCTAAGGATTTGGAGAT
EST: ACCTGGGCTTTCAATCTTCAGGCTGCCATAGACATGTTTAGTTCTTATAG GGAAAGGGACTATTGGTCGGTGCTGGAACACCCACCTAAGGATTTGGAGATEST: gi|86473778|gb|DY240148.1|DY240148
genomic: ACCTGGGCTTTCAATCTTCAGGCTGCCATAGACATGTTTAGTTCTTATAGgtaatgttta ... taattttcagGGAAAGGGACTATTGGTCGGTGCTGGAACACCCACCTAAGGATTTGGAGAT
EST: ACCTGGGCTTCCAATCTTCAGGCTGCCATAGACATGTTTAGTTCTTATAG GGAAAGGGACTATTGGTCGGTGCTGGAACACCCACCTAAGGATTTGGAGATEST: gi|31348702|gb|CD433059.1|CD433059
genomic: ACCTGGGCTTTCAATCTTCAGGCTGCCATAGACATGTTTAGTTCTTATAGgtaatgttta ... taattttcagGGAAAGGGACTATTGGTCGGTGCTGGAACACCCACCTAAGGATTTGGAGAT
EST: ACCTGGGCTTTCAATCTTCAGGCTGCCATAGACATGTTTAGTTCTTATAG GGAAAGGGACTATTGGTCGGTGCTGGAACACCCACCTAAGGATTTGGAGATEST: gi|78086128|gb|DV514521.1|DV514521
genomic: ACCTGGGCTTTCAATCTTCAGGCTGCCATAGACATGTTTAGTTCTTATAGgtaatgttta ... taattttcagGGAAAGGGACTATTGGTCGGTGCTGGAACACCCACCTAAGGATTTGGAGAT
EST: ACCTGGGCTTTCAATCTTCAGGCTGCCATAGACATGTTTAGTTCTTATAG GGAAAGGGACTATTGGTCGGTGCTGGAACACCCACCTAAGGATTTGGAGAT
genomic: ACCTGGGCTTTCAATCTTCAGGCTGCCATAGACATGTTTAGTTCTTATAGgtaatgttta ... taattttcagGGAAAGGGACTATTGGTCGGTGCTGGAACACCCACCTAAGGATTTGGAGAT
gcctatgatttgctgttaatttatgttgctgagttcaaatattgttaattttcagGGAAAGGGACTATTGGTCGGTGCTGGAACACCCACCTAAGGATTTGGAGATTGCAATAGTGCAAGCAGAGCACAGTGATCGATGGGTCCCTGATGACGTT
tgttaat putative branch site (score: 3)
ttttc CT-rich tract
agttcaaatattgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgtttagtgtgaagttctcttgtaactgtatattatttatgtatcgagaattgtttgttgacatgaatcataacatcagacaggcctatgatttgctgttaatttatgttgctgagttcaaatattgttaattttcagGGAAAGGGACTATTGGTCGGTGCTGGAACACCCACCTAAGGATTTGGAGATTGCAATAGTGCAAGCAGAGCACAGTGATCGATGGGTCCCTGATGACGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA