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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaatcccctaccaccacttttgtgagtcgtcttatgaattctttcctgtgccaaaaataatcagaaaatctactctgatgatttgagcagggcccttttgactgactgataatattcttttcatggcagACCGGGTTGCTTAGTGCATACATTATCAAGAAGCTTTGTTTTGCCAGGTCTGCGCACAATTCTCTTTCTCTGTGGGGGTAG

Basic information

species Zea mays
transcript GRMZM2G701776_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G701776_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os05g05590.1 (Oryza sativa), 3'ss of exon 7
gtaagtaatcccctaccaccacttttgtgag--tcgtcttatgaattctttcctgtgccaaaaataatcagaaaatctactctgatgatttgagcagggcccttttgactgactgataatattcttttcatggcagACCGGGTTGCTTAGTGCATACATTATCAAGAAGCTTTGTTTTGCCAGGTCTGCGCACAATTCTCTTTCTCTGTGGGGGTAG
    ||||  | ||        |||||  |   ||  || ||   | |||| || | |||   |  | |      |||  |    | |||||| || | |  ||| |||| | |  |  || ||  ||  |||||| | |||||||||||||| || ||||| ||||| || |||||||||||                                  
----gtaagtctct----ttgtttttgacaacctccactgatctttccttttcttttccatttactaccttcctttctgatg-attcatttgaccatgcctttttggactaattactggtactcactt--tggcagGCTGGGTTGCTTAGTGCCTATATTATTAAGAAACTATGTTTTGCCAG----------------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgatgatttgagcagggcccttttgactgactgataatattcttttcatggcagACCGGGTTGCTTAGTGCATACATTATCAAGAAGCTTTGTTTTGCCAGGTCTGCGCACAATTCTCTTTCTCTGTGGGGGTAG
                                      tattcttttc  CT-rich tract
                                  ataatattcttttcat  TA-rich tract