ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq
PPT, BS, UA-tract

Sequence

atgc intronic sequence ATGC exonic sequence

gtactggttaccatctggagttggaaggctggatgcacttttaatttttaacagagtttctgagaatgatccagtaagttctctatattctgtatctgtatagATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACATTACTCAACTGGCGTTGATATGTGGTCTGTTGGATGCATCTTTG

Basic information

species	Zea mays
transcript	GRMZM2G495626_T03
intron #	3
splice site	3'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G495626_T03 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g67160.1 (Oryza sativa), 3'ss of exon 3

gtactggttaccatctggagttggaaggctggatgcacttttaatttttaacagagtttctgagaatgatccagtaagttctctatat-tctgtatc-tgt-atagATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACATTACTCAACTGGCGTTGATATGTGGTCTGTTGGATGCATCTTTG
                             ||  | ||| | | || |     |   |||||||  ||| || || || |||  ||||| ||||| |  |||   |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||| || ||||| ||||| |||||||| |
-------------------------gtaatgtttacacatctcatctgggctaa--tttctgaacatgctctagcaatttccttatatgtctgttttgtgttgcagATTGTGACTCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGATCAACACATTACTCAACCGGTGTTGACATTTGGTCCGTTGGTTGCATCTTCG

upper sequence: GRMZM2G495626_T03 (Zea mays), 3'ss of exon 3
lower sequence: Vv08s0056g00210.t01 (Vitis vinifera), 3'ss of exon 1

--gtactggttaccatctg-gagttggaaggctggatgcacttttaatttttaacagagtttctgagaatgatccagtaagttctctatattctgtatctgtatagATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACATTACTCAACTGGCGTTGATATGTGGTCTGTTGGATGCATCTTTG
  || || | |     ||  | | |         ||| ||  |  | | ||| |      |||  |   | ||  | ||  |  | | |  |    | |   | ||||||| || || |||||||||||||| || || ||||||||  | ||||||||||| || || || ||||||||||||||||||||||| ||||
gagttctagctgtttcctttgtgctctcttcagtgatccaaatggagtcttttat----cttcatatgcttat--aatatttcgtttttgcttgtaagcaaaacagATTGTCACGCTGTGGTACAGAGCTCCAGAGGTGTTGCTTGGCTCTACACATTACTCTACCGGTGTGGATATGTGGTCTGTTGGATGCATTTTTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|149101462|gb|EE187582.2|EE187582

EST:     TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAG                         ATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT
genomic: TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAGgtactggtta ... atctgtatagATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT

EST: gi|74238747|gb|DT646661.1|DT646661

EST:     TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAG                         ATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGAAGCAACACAT
genomic: TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAGgtactggtta ... atctgtatagATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT

EST: gi|101398284|gb|EB821015.1|EB821015

EST:     TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAG                         ATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT
genomic: TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAGgtactggtta ... atctgtatagATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT

EST: gi|71450236|gb|DR831286.1|DR831286

EST:     TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAG                         ATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT
genomic: TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAGgtactggtta ... atctgtatagATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT

EST: gi|71771339|gb|DR969276.1|DR969276

EST:     TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAG                         ATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT
genomic: TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAGgtactggtta ... atctgtatagATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT

EST: gi|91055879|gb|EB166297.1|EB166297

EST:     TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAACTACACCCATGAG                         ATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT
genomic: TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAGgtactggtta ... atctgtatagATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT

EST: gi|87157025|gb|DY401814.1|DY401814

EST:     TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAG                         ATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT
genomic: TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAGgtactggtta ... atctgtatagATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT

EST: gi|149085475|gb|EE174981.2|EE174981

EST:     TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAG                         ATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT
genomic: TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAGgtactggtta ... atctgtatagATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT

EST: gi|71313275|gb|DR793171.1|DR793171

EST:     TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAG                         ATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT
genomic: TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAGgtactggtta ... atctgtatagATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT

EST: gi|60343112|gb|DN210085.1|DN210085

EST:     CACTGTGCCCATGAAAAGCTACACCCATGAG                         ATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT
genomic: CACTGTGCCCATGAAAAGCTACACCCATGAGgtactggtta ... atctgtatagATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT

EST: gi|71450237|gb|DR831287.1|DR831287

EST:     TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAG                         ATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT
genomic: TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAGgtactggtta ... atctgtatagATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT

EST: gi|91872387|gb|EB402344.1|EB402344

EST:     TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAG                         ATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT
genomic: TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAGgtactggtta ... atctgtatagATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT

EST: gi|22542240|gb|BU092678.1|BU092678

EST:     TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAG                         ATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT
genomic: TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAGgtactggtta ... atctgtatagATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT

EST: gi|76294289|gb|DV033857.1|DV033857

EST:     TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAG                         ATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT
genomic: TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAGgtactggtta ... atctgtatagATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT

EST: gi|71431608|gb|DR812658.1|DR812658

EST:     CCCATGAAAAGCTACACCCATGAG                         ATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT
genomic: CCCATGAAAAGCTACACCCATGAGgtactggtta ... atctgtatagATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT

EST: gi|149110995|gb|EE294494.2|EE294494

EST:     TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAG                         ATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT
genomic: TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAGgtactggtta ... atctgtatagATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT

EST: gi|32929643|gb|CF034455.1|CF034455

EST:     TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAG                         ATTGTGACACTTTGGTA
genomic: TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAGgtactggtta ... atctgtatagATTGTGACCCTTTGGTA

EST: gi|211362664|gb|FL128442.1|FL128442

EST:     TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAG                         ATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT
genomic: TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAGgtactggtta ... atctgtatagATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT

EST: gi|32928347|gb|CF033159.1|CF033159

EST:     TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAG                         ATTGTGACACTTTGGTA
genomic: TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAGgtactggtta ... atctgtatagATTGTGACCCTTTGGTA

EST: gi|76908586|gb|DV163013.1|DV163013

EST:     AGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAG                         ATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT
genomic: AGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAGgtactggtta ... atctgtatagATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT

EST: gi|76289583|gb|DV029151.1|DV029151

EST:     TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAG                         ATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT
genomic: TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAGgtactggtta ... atctgtatagATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT

EST: gi|149110996|gb|EE294495.2|EE294495

EST:     TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAG                         ATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT
genomic: TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAGgtactggtta ... atctgtatagATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT

EST: gi|71313277|gb|DR793172.1|DR793172

EST:     TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAG                         ATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT
genomic: TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAGgtactggtta ... atctgtatagATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT

EST: gi|71431609|gb|DR812659.1|DR812659

EST:     TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAG                         ATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT
genomic: TGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAGgtactggtta ... atctgtatagATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACAT

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 355

ACAAAACCTGCTGGTGGACAAGGAGAAGGGTATACTGAAGATTGCTGATCTGGGACTCGGTAGGGCTTTCACTGTGCCCATGAAAAGCTACACCCATGAGgtactggtta ... atctgtatagATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACATTACTCAACTGGCGTTGATATGTGGTCTGTTGGATGCATCTTTG

Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 45

Block sizes: 47 (upstream exon), 44 (downstream exon)
Score: 45

Block sizes: 49 (upstream exon), 40 (downstream exon)
Score: 22

atgc intronic sequence ATGC exonic sequence

Intronic sequence truncated to 55 bases.

taacagagtttctgagaatgatccagtaagttctctatattctgtatctgtatagATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACATTACTCAACTGGCGTTGATATGTGGTCTGTTGGATGCATCTTTG