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gtcagtattcagtagcgaagaaattctaaaaagggatttcggtgtttgagtgtattttagagaattcatttcggtgtcgctgtttgaaatttcagGCGGATTACATGTCGAAGCTGGTTAAGATTGCGGGAATCACAATTGCTGCATCGAGAGTAAAAGCCAAAGCCACTCATGTAACTCTTATATGCAAGAATT
species | Zea mays |
transcript | GRMZM2G450055_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGATCTTTCTCTCCTCCAAGGAGAACTGCCTGTCCATGAGATCTGTCGGG GCGGATTACATGTCGAAGCTGGTTAAGATTGCGGGAATCACAATTGCTGCAEST: gi|149014583|gb|EE044230.2|EE044230
genomic: AGATCTTTCTCTCCTCCAAGGAGAACTGCCTGTCCATGAGATCTGTCGGGgtcagtattc ... gaaatttcagGCGGATTACATGTCGAAGCTGGTTAAGATTGCGGGAATCACAATTGCTGCA
EST: AGATCTTTCTCTCCTCCAAGGAGAACTGCCTGTCCATGAGATCTGTCGGG GCGGATTACATGTCGAAGCTGGTTAAGATTGCGGGAATCACAATTGCTGCAEST: gi|78112949|gb|DV531343.1|DV531343
genomic: AGATCTTTCTCTCCTCCAAGGAGAACTGCCTGTCCATGAGATCTGTCGGGgtcagtattc ... gaaatttcagGCGGATTACATGTCGAAGCTGGTTAAGATTGCGGGAATCACAATTGCTGCA
EST: AGATCTTTCTCTCCTCCAAGGAGAACTGCCTGTCCATGAGATCTGTCGGG GCGGATTACATGTCGAAGCTGGTTAAGATTGCGGGAATCACAATTGCTGCAEST: gi|149081132|gb|EE170239.2|EE170239
genomic: AGATCTTTCTCTCCTCCAAGGAGAACTGCCTGTCCATGAGATCTGTCGGGgtcagtattc ... gaaatttcagGCGGATTACATGTCGAAGCTGGTTAAGATTGCGGGAATCACAATTGCTGCA
EST: AGATCTTTCTCTCCTCCAAGGAGAACTGCCTGTCCATGAGATCTGTCGGG GCGGATTACATGTCGAAGCTGGTTAAGATTGCGGGAATCACAATTGCTGCA
genomic: AGATCTTTCTCTCCTCCAAGGAGAACTGCCTGTCCATGAGATCTGTCGGGgtcagtattc ... gaaatttcagGCGGATTACATGTCGAAGCTGGTTAAGATTGCGGGAATCACAATTGCTGCA
ggtgtttgagtgtattttagagaattcatttcggtgtcgctgtttgaaatttcagGCGGATTACATGTCGAAGCTGGTTAAGATTGCGGGAATCACAATTGCTGCATCGAGAGTAAAAGCCAAAGCCACTCATGTAACTCTTATATGCAAGAATT
tattttagagaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtattcagtagcgaagaaattctaaaaagggatttcggtgtttgagtgtattttagagaattcatttcggtgtcgctgtttgaaatttcagGCGGATTACATGTCGAAGCTGGTTAAGATTGCGGGAATCACAATTGCTGCATCGAGAGTAAAAGCCAAAGCCACTCATGTAACTCTTATATGCAAGAATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA