1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ccccaatggttaagccgatctatctaggttaatttgctcatattatcaacagagttgatgaaggttccaaagatatgattttcttttttgcgctttgcagGGAACAAAAATGGTCTACAAGCATTTGGCCACACTATACTTTGTTTTTGTCTTTGATAGCTCTGAGAACGAGCTTGCCATGCTCGACCTCGTACAAG
species | Zea mays |
transcript | GRMZM2G177914_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGCCCGAGAGCGCGAGGAATTTTGTCAAGGTGGACTCCATCTTTGGCCCG GGAACAAAAATGGTCTACAAGCATTTGGCCACACTATACTTTGTTTT-G--EST: gi|19822213|gb|BQ048237.1|BQ048237
genomic: GGCCCGAGAGCGCGAGCAATTTTGTCAAGGTGGACTCCATCTTTGGCCCGgtaatggctg ... cgctttgcagGGAACAAAAATGGTCTACAAGCATTTGGCCACACTATACTTTGTTTTTGTC
EST: GGCCCGAGAGCGCGAGCAATTTTGTCAAGGTGGACTCCATCTTTGGCCCG GGAACAAAAATGGTCTACAAGCATTTGGCCACACTATACTTTGTTTTTGTCEST: gi|71447059|gb|DR828109.1|DR828109
genomic: GGCCCGAGAGCGCGAGCAATTTTGTCAAGGTGGACTCCATCTTTGGCCCGgtaatggctg ... cgctttgcagGGAACAAAAATGGTCTACAAGCATTTGGCCACACTATACTTTGTTTTTGTC
EST: GGCCCGAGAGCGCGAGCAATTTTGTCAAGGTGGACTCCATCTTTGGCCCG GGAACAAAAATGGTCTACAAGCATTTGGCCACACTATACTTTGTTTTTGTCEST: gi|211467096|gb|FK972975.1|FK972975
genomic: GGCCCGAGAGCGCGAGCAATTTTGTCAAGGTGGACTCCATCTTTGGCCCGgtaatggctg ... cgctttgcagGGAACAAAAATGGTCTACAAGCATTTGGCCACACTATACTTTGTTTTTGTC
EST: GGCCCGAGAGCGCGAGCAATTTTGTCAAGGTGGACTCCATCTTTGGCCCG GGAACAAAAATGGTCTACAAGCATTTGGCCACACTATACTTTGTTTTTGTTEST: gi|149090359|gb|EE179665.2|EE179665
genomic: GGCCCGAGAGCGCGAGCAATTTTGTCAAGGTGGACTCCATCTTTGGCCCGgtaatggctg ... cgctttgcagGGAACAAAAATGGTCTACAAGCATTTGGCCACACTATACTTTGTTTTTGT-
EST: GGCCCGAGAGCGCGAGCAATTTTGTCAAGGTGGACTCCATCTTTGGCCCG GGAACAAAAATGGTCTACAAGCATTTGGCCACACTATACTTTGTTTTTGTCEST: gi|149073163|gb|EE161440.2|EE161440
genomic: GGCCCGAGAGCGCGAGCAATTTTGTCAAGGTGGACTCCATCTTTGGCCCGgtaatggctg ... cgctttgcagGGAACAAAAATGGTCTACAAGCATTTGGCCACACTATACTTTGTTTTTGTC
EST: GGCCCGAGAGCGCGAGCAATTTTGTCAAGGTGGACTCCATCTTTGGCCCG GGAACAAAAATGGTCTACAAGCATTTGGCCACACTATACTTTGTTTTTGTCEST: gi|211467090|gb|FK972969.1|FK972969
genomic: GGCCCGAGAGCGCGAGCAATTTTGTCAAGGTGGACTCCATCTTTGGCCCGgtaatggctg ... cgctttgcagGGAACAAAAATGGTCTACAAGCATTTGGCCACACTATACTTTGTTTTTGTC
EST: GCCCGAGAGCGCGAGCAATTTTGTCAAGGTGGACTCCATCTTTGGCCCCG GGAACAAAAATGGTCTACAAGCATTTGGCCACACTATACTTTGTTTTTGTEST: gi|211469619|gb|FK972986.1|FK972986
genomic: GCCCGAGAGCGCGAGCAATTTTGTCAAGGTGGACTCCATCTTTGGCCC-Ggtaatggctg ... cgctttgcagGGAACAAAAATGGTCTACAAGCATTTGGCCACACTATACTTTGTTTTTGT
EST: GGCCCGAGAGCGCGAGCAATTTTGTCAAGGTGGACTCCATCTTTGGCCCG GGAACAAAAATGGTCTACAAGCATTTGGCCACACTATACTTTGTTTTTGTCEST: gi|211467098|gb|FK972977.1|FK972977
genomic: GGCCCGAGAGCGCGAGCAATTTTGTCAAGGTGGACTCCATCTTTGGCCCGgtaatggctg ... cgctttgcagGGAACAAAAATGGTCTACAAGCATTTGGCCACACTATACTTTGTTTTTGTC
EST: GGCCCGAGAGCGCGAGCAATTTTGTCAAGGTGGACTCCATCTTTGGCCCG GGAACAAAAATGGTCTACAAGCATTTGGCCACACTATACTTTGTTEST: gi|5499044|gb|AI854911.1|AI854911
genomic: GGCCCGAGAGCGCGAGCAATTTTGTCAAGGTGGACTCCATCTTTGGCCCGgtaatggctg ... cgctttgcagGGAACAAAAATGGTCTACAAGCATTTGGCCACACTATACTTTGTT
EST: GGCCCGAGAGCGCGAGCAATTTTGTCAAGGTGGACTCCATCTTTGGCCCG GGAACAAAAATGGTCTACAAGCATTTGGCCACACTATACTTTGTTTTTGTCEST: gi|211472147|gb|FK972996.1|FK972996
genomic: GGCCCGAGAGCGCGAGCAATTTTGTCAAGGTGGACTCCATCTTTGGCCCGgtaatggctg ... cgctttgcagGGAACAAAAATGGTCTACAAGCATTTGGCCACACTATACTTTGTTTTTGTC
EST: GGCCCGAGAGCGCGAGCAATTTTGTCAAGGTGGACTCCATCTTTGGCCCG GGAACAAAAATGGTCTACAAGCATTTGGCCACACTATACTTTGTTTTTGTCEST: gi|211472153|gb|FK973002.1|FK973002
genomic: GGCCCGAGAGCGCGAGCAATTTTGTCAAGGTGGACTCCATCTTTGGCCCGgtaatggctg ... cgctttgcagGGAACAAAAATGGTCTACAAGCATTTGGCCACACTATACTTTGTTTTTGTC
EST: GGCCCGAGAGCGCGAGCAATTTTGTCAAGGTGGACTCCATCTTTGGCCCG GGAACAAAAATGGTCTACAAGCAEST: gi|211472152|gb|FK973001.1|FK973001
genomic: GGCCCGAGAGCGCGAGCAATTTTGTCAAGGTGGACTCCATCTTTGGCCCGgtaatggctg ... cgctttgcagGGAACAAAAATGGTCTACAAGCA
EST: GGCCCGAGAGCGCGAGCAATTTTGTCAAGGTGGACTCCATCTTTGGCCCG GGAACAAAAATGGTCTACAAGCATTTGGCCACACTATACTTTEST: gi|211472150|gb|FK972999.1|FK972999
genomic: GGCCCGAGAGCGCGAGCAATTTTGTCAAGGTGGACTCCATCTTTGGCCCGgtaatggctg ... cgctttgcagGGAACAAAAATGGTCTACAAGCATTTGGCCACACTATACTTT
EST: GGCCCGAGAGCGCGAGCAATTTTGTCAAGGTGGACTCCATCTTTGGCCCG GGAACAAAAATGGTCTACAAGCAEST: gi|211467100|gb|FK972979.1|FK972979
genomic: GGCCCGAGAGCGCGAGCAATTTTGTCAAGGTGGACTCCATCTTTGGCCCGgtaatggctg ... cgctttgcagGGAACAAAAATGGTCTACAAGCA
EST: GGCCCGAGAGCGCGAGCAATTTTGTCAAGGTGGACTCCATCTTTGGCCCG GGAACAAAAATGGTCTACAAGCATTTGGCCACACTATACTTTGTTTTTGTCEST: gi|211469628|gb|FK972995.1|FK972995
genomic: GGCCCGAGAGCGCGAGCAATTTTGTCAAGGTGGACTCCATCTTTGGCCCGgtaatggctg ... cgctttgcagGGAACAAAAATGGTCTACAAGCATTTGGCCACACTATACTTTGTTTTTGTC
EST: GGCCCGAGAGCGCGAGCAATTTTGTCAAGGTGGACTCCATCTTTGGCCCG GGAACAAAAATGGTCTACAAGCATTTGEST: gi|211467088|gb|FK972967.1|FK972967
genomic: GGCCCGAGAGCGCGAGCAATTTTGTCAAGGTGGACTCCATCTTTGGCCCGgtaatggctg ... cgctttgcagGGAACAAAAATGGTCTACAAGCATTTG
EST: GGCCCGAGAGCGCGAGCAATTTTGTCAAGGTGGACTCCATCTTTGGCCCG GGAACAAAAATGGTCTACAAGCATTTGGCCACACTATACTTTGTTTTTGTCEST: gi|211469626|gb|FK972993.1|FK972993
genomic: GGCCCGAGAGCGCGAGCAATTTTGTCAAGGTGGACTCCATCTTTGGCCCGgtaatggctg ... cgctttgcagGGAACAAAAATGGTCTACAAGCATTTGGCCACACTATACTTTGTTTTTGTC
EST: GGCCCGAGAGCGCGAGCAATTTTGTCAAGGTGGACTCCATCTTTGGCCCG GGAACAAAAATGGTCTACAAGCATTTGGCCACACTATACTTTGTTTTTGTCEST: gi|71429421|gb|DR810471.1|DR810471
genomic: GGCCCGAGAGCGCGAGCAATTTTGTCAAGGTGGACTCCATCTTTGGCCCGgtaatggctg ... cgctttgcagGGAACAAAAATGGTCTACAAGCATTTGGCCACACTATACTTTGTTTTTGTC
EST: GGCCCGAGAGCGCGAGCAATTTTGTCAAGGTGGACTCCATCTTTGGCCCG GGAACAAAAATGGTCTACAAGCATTTGGCCACACTATACTTTG
genomic: GGCCCGAGAGCGCGAGCAATTTTGTCAAGGTGGACTCCATCTTTGGCCCGgtaatggctg ... cgctttgcagGGAACAAAAATGGTCTACAAGCATTTGGCCACACTATACTTTG
tcaacagagttgatgaaggttccaaagatatgattttcttttttgcgctttgcagGGAACAAAAATGGTCTACAAGCATTTGGCCACACTATACTTTGTTTTTGTCTTTGATAGCTCTGAGAACGAGCTTGCCATGCTCGACCTCGTACAAG
agttgat putative branch site (score: 5)
ttttcttttttgcgct putative PPT
aaagatatgattttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccccaatggttaagccgatctatctaggttaatttgctcatattatcaacagagttgatgaaggttccaaagatatgattttcttttttgcgctttgcagGGAACAAAAATGGTCTACAAGCATTTGGCCACACTATACTTTGTTTTTGTCTTTGATAGCTCTGAGAACGAGCTTGCCATGCTCGACCTCGTACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT