1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gtgcggggcgcccgacgcacacactaatatatggtagctgctctgtgttttaaaaaatatgatagctccattctatcctcattgtggttatatgtggtagGGGAGACAAATCCATTGAGTTGGGCAATGAGGATGAGGGCTGCGCTTTATGTGGCACAAGCGTTGGACTACTGCAGTAGCAAAGGGAGGGCACTCTATCA
species | Zea mays |
transcript | GRMZM2G177445_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGTCGCAGAGTTCATGCCGCACGAGACCTTGGCAAAGCATCTCTTCCACT GGGAGACAAATCCATTGAGTTGGGCAATGAGGATGAGGGCTGCGCTTTATGEST: gi|211337353|gb|FK979584.1|FK979584
genomic: CGTCGCAGAGTTCATGCCGCACGAGACCTTGGCAAAGCATCTCTTCCACTgtatgttcgg ... tatgtggtagGGGAGACAAATCCATTGAGTTGGGCAATGAGGATGAGGGCTGCGCTTTATG
EST: CGTCGCAGAGTTCATGCCGCACGAGACCTTGGCAAAGCATCTCTTCCACT GGGAGACAA-TCCATTGAGTTGGEST: gi|149023559|gb|EE045892.2|EE045892
genomic: CGTCGCAGAGTTCATGCCGCACGAGACCTTGGCAAAGCATCTCTTCCACTgtatgttcgg ... tatgtggtagGGGAGACAAATCCATTGAGTTGG
EST: CGTCGCAGAGTTCATGCCGCACGAGACCTTGGCAAAGCATCTCTTCCACT GGGAGACAAATCCATTGAGTTGGGCAATGAGGATGAGGGCTGCGCTTTATGEST: gi|148967635|gb|EE018892.2|EE018892
genomic: CGTCGCAGAGTTCATGCCGCACGAGACCTTGGCAAAGCATCTCTTCCACTgtatgttcgg ... tatgtggtagGGGAGACAAATCCATTGAGTTGGGCAATGAGGATGAGGGCTGCGCTTTATG
EST: CGTCGCAGAGTTCATGCCGCACGAGACCTTGGCAAAGCATCTCTTCCACT GGGAGACAAATCCATTGAGTTGGGCAATGAGGATGAGGGCTGCGCTTTATGEST: gi|148996262|gb|EE035542.2|EE035542
genomic: CGTCGCAGAGTTCATGCCGCACGAGACCTTGGCAAAGCATCTCTTCCACTgtatgttcgg ... tatgtggtagGGGAGACAAATCCATTGAGTTGGGCAATGAGGATGAGGGCTGCGCTTTATG
EST: CGTCGCAGAGTTCATGCCGCACGAGACCTTGGCAAAGCATCTCTTCCACT GGGAGACAAATCCATTGAGTTGGGCAATGAGGATGAGGGCTGCGCTTTATGEST: gi|76281723|gb|DV021291.1|DV021291
genomic: CGTCGCAGAGTTCATGCCGCACGAGACCTTGGCAAAGCATCTCTTCCACTgtatgttcgg ... tatgtggtagGGGAGACAAATCCATTGAGTTGGGCAATGAGGATGAGGGCTGCGCTTTATG
EST: CGTCGCAGAGTTCATGCCGCACGAGACCTTGGCAAAGCATCTCTTCCACT GGGAGACAAATCCATTGAGTTGGGGCA-TGAGGATGAGGGCTGCGCTTTATEST: gi|211337354|gb|FK979585.1|FK979585
genomic: CGTCGCAGAGTTCATGCCGCACGAGACCTTGGCAAAGCATCTCTTCCACTgtatgttcgg ... tatgtggtagGGGAGACAAATCCATTGAGTTGGG-CAATGAGGATGAGGGCTGCGCTTTAT
EST: CGTCGCAGAGTTCATGCCGCACGAGACCTTGGCAAAGCATCTCTTCCACT GGGAGACAAATEST: gi|93284518|gb|EB676782.1|EB676782
genomic: CGTCGCAGAGTTCATGCCGCACGAGACCTTGGCAAAGCATCTCTTCCACTgtatgttcgg ... tatgtggtagGGGAGACAAAT
EST: CGTCGCAGAGTTCATGCCGCACGAGACCTTGGCAAAGCATCTCTTCCACT GGGAGANCAA-TCCATTGAGTTGGGCAATGAGGATGAGGGCTGCGCTTTATEST: gi|71440119|gb|DR821169.1|DR821169
genomic: CGTCGCAGAGTTCATGCCGCACGAGACCTTGGCAAAGCATCTCTTCCACTgtatgttcgg ... tatgtggtagGGGAGA-CAAATCCATTGAGTTGGGCAATGAGGATGAGGGCTGCGCTTTAT
EST: CGTCGCAGAGTTCATGCCGCACGAGACCTTGGCAAAGCATCTCTTCCACT GGGAGACAAATCCATTGAGTTGGGCAATGAGGATGAGGGCTGCGCTTTATGEST: gi|71447053|gb|DR828103.1|DR828103
genomic: CGTCGCAGAGTTCATGCCGCACGAGACCTTGGCAAAGCATCTCTTCCACTgtatgttcgg ... tatgtggtagGGGAGACAAATCCATTGAGTTGGGCAATGAGGATGAGGGCTGCGCTTTATG
EST: GTCGCAGAGTTCATGCCGCACGAGACCTTTGG-AAAGCATCTCTTCCACT GGGAAACAAATCCCTTGAGTTGEST: gi|148931103|gb|EC873754.2|EC873754
genomic: GTCGCAGAGTTCATGCCGCACGAGACCTT-GGCAAAGCATCTCTTCCACTgtatgttcgg ... tatgtggtagGGGAGACAAATCCATTGAGTTG
EST: CGTCGCAGAGTTCATGCCGCACGAGACCTTGGCAAAGCATCTCTTCCACT GGGAGACAAATCCATTGAGTTGGGCAATGAGGATGAGGGCTGCGCTTTATG
genomic: CGTCGCAGAGTTCATGCCGCACGAGACCTTGGCAAAGCATCTCTTCCACTgtatgttcgg ... tatgtggtagGGGAGACAAATCCATTGAGTTGGGCAATGAGGATGAGGGCTGCGCTTTATG
tgttttaaaaaatatgatagctccattctatcctcattgtggttatatgtggtagGGGAGACAAATCCATTGAGTTGGGCAATGAGGATGAGGGCTGCGCTTTATGTGGCACAAGCGTTGGACTACTGCAGTAGCAAAGGGAGGGCACTCTATCA
taaaaaatatgata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcggggcgcccgacgcacacactaatatatggtagctgctctgtgttttaaaaaatatgatagctccattctatcctcattgtggttatatgtggtagGGGAGACAAATCCATTGAGTTGGGCAATGAGGATGAGGGCTGCGCTTTATGTGGCACAAGCGTTGGACTACTGCAGTAGCAAAGGGAGGGCACTCTATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
-tgcgggg
- - - - - - -gacgcac
- - - - - - - - - - acactaa
- - - - - - - - - - - - - - - - - - gctgctc
- - - - - - - - - - - - - - - - - - - - - -tgtgttt
- - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaat