1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaccgaccgaccggcctgtctgcctgcctgcttcatcttctccgcttcttccggcttgataagctagtgtcgttgggcaatcgctcacggctcaccggagtgtctccctcccctgcttgcagTTCCTGTCCATGAAGATCGCCGCTTCCAACCCGGTGGTGAGCTTCGACATCGTCGAGGACCTCTTCGGCCGGCAGCTGAAGCAGTCACGACGCAGCCCGG
species | Zea mays |
transcript | GRMZM2G176289_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGCTTGACGAGATCATCAACTACGTGCAGTCCCTGCAGAAGCAAGTCGAG TTCCTGTCCATGAAGATCGCCGCTTTCCACCCCGEST: gi|50337784|gb|CO532910.1|CO532910
genomic: TGCTTGACGAGATCATCAACTACGTGCAGTCCCTGCAGAAGCAAGTCGAGgtaccgaccg ... ctgcttgcagTTCCTGTCCATGAAGATCGCCGCTT-CCAACCCG
EST: TGCTTGACGAGATCATCAACTACGTGCAGTCCCTGCAGAAGCAAGTCGAG TTCCTGTCCATGAAGATCGCCGCTTCCAACCCGGTGGTGAGCTTCGACATC
genomic: TGCTTGACGAGATCATCAACTACGTGCAGTCCCTGCAGAAGCAAGTCGAGgtaccgaccg ... ctgcttgcagTTCCTGTCCATGAAGATCGCCGCTTCCAACCCGGTGGTGAGCTTCGACATC
tgtcgttgggcaatcgctcacggctcaccggagtgtctccctcccctgcttgcagTTCCTGTCCATGAAGATCGCCGCTTCCAACCCGGTGGTGAGCTTCGACATCGTCGAGGACCTCTTCGGCCGGCAGCTGAAGCAGTCACGACGCAGCCCGG
ggctcac putative branch site (score: 3)
tgtctccctcccctgc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaccgaccgaccggcctgtctgcctgcctgcttcatcttctccgcttcttccggcttgataagctagtgtcgttgggcaatcgctcacggctcaccggagtgtctccctcccctgcttgcagTTCCTGTCCATGAAGATCGCCGCTTCCAACCCGGTGGTGAGCTTCGACATCGTCGAGGACCTCTTCGGCCGGCAGCTGAAGCAGTCACGACGCAGCCCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC