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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcatcaactcactcaacttaagatgcattaccatgcttgattggtgttttgattctaatccatggctgctgtgcttcgcagACAGGTGGCTACAGTGAGGACATGATTCCAACG

Basic information

species Zea mays
transcript GRMZM2G171060_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G171060_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os02g49980.2 (Oryza sativa), 3'ss of exon 2
gtatgcatcaactcactcaa-cttaagatgcattaccatgcttgattggtgttt--tgattctaatccatggctgctgtgcttcgcagACAGGTGGCTACAGTGAGGACATGATTCCAACG
||||| |||| || ||  || ||| |  |   |||||||  |    |  ||  |  || || |||| | | ||||   |||||| ||||||||||||||||| || |||||||||||||| 
gtatgtatcatctaacggaatctttatttatcttaccattttaatgttatgcctggtggttttaattcgttgctggcatgcttctcagACAGGTGGCTACAGCGAAGACATGATTCCAACT

upper sequence: GRMZM2G171060_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA14G39540.1 (Glycine max), 3'ss of exon 2
----------------------------------gtatgcatcaactcactcaacttaagatgcattacca-------tgcttgattgg---tgttttgattcta-----atccatggctgctgtgctt---cgcagACAGGTGGCTACAGTGAGGACATGATTCCAACG
                                   ||   || ||  |    || | ||  |   |||  |       ||||    |||   ||||||||   ||     ||   ||| |  | || ||    |||||| || |||||||||||||||||||||||||| 
gtgagttgctgcagcattgcaattttgactcaatttagaaattaaaccctgaaattcaatttctgttattactgttattgctctcatggccttgttttgacattacattgatgtttggtttttttgtttacctgcagACTGGGGGCTACAGTGAGGACATGATTCCAACT

upper sequence: GRMZM2G171060_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA02G41170.1 (Glycine max), 3'ss of exon 2
-------------------gtat-gcatcaactcactcaacttaaga----tgcattaccatgcttg-attggtgtt-ttgattctaatccatggctgctgtgcttcgcagACAGGTGGCTACAGTGAGGACATGATTCCAACG
                   |  | |||     | |||||| |||  |    || | | |  | || | ||   |||| ||||   |  |   ||| |    |     |||||| || |||||||||||||||||||||||||| 
gtgagttgctgctgctgctgcgttgcaattttttactcaatttagaaaccctgaagttcagttctagtataactgttattgacattggtatttggttttgtttacctgcagACTGGGGGCTACAGTGAGGACATGATTCCAACT

upper sequence: GRMZM2G171060_T02 (Zea mays), 3'ss of exon 3
lower sequence: Vv14s0006g01090.t01 (Vitis vinifera), 3'ss of exon 3
gtatgcatcaactcactcaacttaagatgcattaccatgcttgattggtgttttgattctaatccatggctgctgtgcttcgcagACAGGTGGCTACAGTGAGGACATGATTCCAACG
   ||  | ||| |        |  ||| | || |  |  ||| || ||| |||  || ||| |||||  |||| |  |   |||||||| |||||||||||||||||||||||||| 
--gtgagtgaacaccaaatctgtgtgattcctttctgttattgtttagtgattttcttttaa-ccatga-tgctttcataaccagACAGGAGGCTACAGTGAGGACATGATTCCAACT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211076135|gb|FL255305.1|FL255305
EST:     TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCTGTTGCT                         ACAGGTGGCTACAGCGAGGACATGATTCCAACG
genomic: TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCCGTTGCTgtatgcatca ... tgcttcgcagACAGGTGGCTACAGTGAGGACATGATTCCAACG
EST: gi|211076134|gb|FL255304.1|FL255304
EST:     TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCTGTTGCT                         ACAGGTGGCTACAG
genomic: TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCCGTTGCTgtatgcatca ... tgcttcgcagACAGGTGGCTACAG
EST: gi|211078875|gb|FL255314.1|FL255314
EST:     TCGTTGGGTTGCAGAATGCTGGGAAGACTTCGCTGGTCAATGCTGTTGCT                         ACAGGTGGCTACAGCGAGGACATGATTCCAACG
genomic: TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCCGTTGCTgtatgcatca ... tgcttcgcagACAGGTGGCTACAGTGAGGACATGATTCCAACG
EST: gi|211076132|gb|FL255302.1|FL255302
EST:     TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCTGTTGCT                         ACAGGTGGCTACAGCGAGGACATGATTCCAACG
genomic: TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCCGTTGCTgtatgcatca ... tgcttcgcagACAGGTGGCTACAGTGAGGACATGATTCCAACG
EST: gi|76286949|gb|DV026517.1|DV026517
EST:     CTGGGAAGACGTCGCTGGTCAATGCCGTTGCT                         ACAGGTGGCTACAGTGAGGACATGATTCCAACG
genomic: CTGGGAAGACGTCGCTGGTCAATGCCGTTGCTgtatgcatca ... tgcttcgcagACAGGTGGCTACAGTGAGGACATGATTCCAACG
EST: gi|211076136|gb|FL255306.1|FL255306
EST:     TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCCGTTGCT                         ACAGGTGGCTACAGTGAGGACATGATTCCAACG
genomic: TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCCGTTGCTgtatgcatca ... tgcttcgcagACAGGTGGCTACAGTGAGGACATGATTCCAACG
EST: gi|211076137|gb|FL255307.1|FL255307
EST:     TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCTGTTGCT                         ACAGGTGGCTACAGCGAGGACATGATTCCAACG
genomic: TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCCGTTGCTgtatgcatca ... tgcttcgcagACAGGTGGCTACAGTGAGGACATGATTCCAACG
EST: gi|211076142|gb|FL255312.1|FL255312
EST:     TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCCGTTGCT                         ACAGGTGGCTACAGTGAGGACATGATTCCAACG
genomic: TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCCGTTGCTgtatgcatca ... tgcttcgcagACAGGTGGCTACAGTGAGGACATGATTCCAACG
EST: gi|34391306|gb|CF384534.1|CF384534
EST:     TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCCGTTGCT                         ACAGGTGGCTACAGTGAGGACATGATTCCAACG
genomic: TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCCGTTGCTgtatgcatca ... tgcttcgcagACAGGTGGCTACAGTGAGGACATGATTCCAACG
EST: gi|211078883|gb|FL255322.1|FL255322
EST:     TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCTGTTGCT                         ACAGGTGGCTACAGCGAGGACATGATTCCAACG
genomic: TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCCGTTGCTgtatgcatca ... tgcttcgcagACAGGTGGCTACAGTGAGGACATGATTCCAACG
EST: gi|211076141|gb|FL255311.1|FL255311
EST:     TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCCGTTGCT                         ACAGGTGGCTACAGTGAGGACATGATTCCAACG
genomic: TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCCGTTGCTgtatgcatca ... tgcttcgcagACAGGTGGCTACAGTGAGGACATGATTCCAACG
EST: gi|211076129|gb|FL255299.1|FL255299
EST:     TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCTGTTGCT                         ACAGGTGGCTACAGCGAGGACATGATTCCAACG
genomic: TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCCGTTGCTgtatgcatca ... tgcttcgcagACAGGTGGCTACAGTGAGGACATGATTCCAACG
EST: gi|76286861|gb|DV026429.1|DV026429
EST:     CTGGGAAGACGTCGCTGGTCAATGCCGTTGCT                         ACAGGTGGCTACAGTGAGGACATGATTCCAACG
genomic: CTGGGAAGACGTCGCTGGTCAATGCCGTTGCTgtatgcatca ... tgcttcgcagACAGGTGGCTACAGTGAGGACATGATTCCAACG
EST: gi|28566462|gb|CB278110.1|CB278110
EST:     TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCCGTTGCT                         ACAGGTGGCTACAGTGAGGACATGATTCCAACG
genomic: TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCCGTTGCTgtatgcatca ... tgcttcgcagACAGGTGGCTACAGTGAGGACATGATTCCAACG
EST: gi|149077255|gb|EE165928.2|EE165928
EST:     TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCCGTTGCT                         ACAGGTGGCTACAGTGAGGACATGATTCCAACG
genomic: TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCCGTTGCTgtatgcatca ... tgcttcgcagACAGGTGGCTACAGTGAGGACATGATTCCAACG
EST: gi|211076140|gb|FL255310.1|FL255310
EST:     TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCTGTTGCT                         ACAGGTGGCTACAGCGAGGACATGATTCCAACG
genomic: TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCCGTTGCTgtatgcatca ... tgcttcgcagACAGGTGGCTACAGTGAGGACATGATTCCAACG
EST: gi|211078880|gb|FL255319.1|FL255319
EST:     TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCTGTTGCT                         ACAGGTGGCTACAGCGAGGACATGATTCCAACG
genomic: TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCCGTTGCTgtatgcatca ... tgcttcgcagACAGGTGGCTACAGTGAGGACATGATTCCAACG
EST: gi|40287223|gb|CK327615.1|CK327615
EST:     TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCCGTTGCT                         ACAGGTGGCTACAGTGAGGACATGATTCCAACG
genomic: TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCCGTTGCTgtatgcatca ... tgcttcgcagACAGGTGGCTACAGTGAGGACATGATTCCAACG
EST: gi|78086343|gb|DV514736.1|DV514736
EST:     TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCCGTTGCT                         ACAGGTGGCTACAGTGAGGACATGATTCCAACG
genomic: TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCCGTTGCTgtatgcatca ... tgcttcgcagACAGGTGGCTACAGTGAGGACATGATTCCAACG
EST: gi|78113799|gb|DV532188.1|DV532188
EST:     TCGTTGGGGTGCAGAATGCTGGGAAGACGTCGCGGGTCAATGCCGTTGCT                         ACAGGTGGCTACAGTGAGGACATGATTCCAACG
genomic: TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCCGTTGCTgtatgcatca ... tgcttcgcagACAGGTGGCTACAGTGAGGACATGATTCCAACG
EST: gi|211078879|gb|FL255318.1|FL255318
EST:     TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCCGTTGCT                         ACAGGTGGCTACAGTGAGGACATGATTCCAACG
genomic: TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCCGTTGCTgtatgcatca ... tgcttcgcagACAGGTGGCTACAGTGAGGACATGATTCCAACG
EST: gi|211078882|gb|FL255321.1|FL255321
EST:     TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCCGTTGCT                         ACAGGTGGCTACAGTGAGGACATGATTCCAACG
genomic: TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCCGTTGCTgtatgcatca ... tgcttcgcagACAGGTGGCTACAGTGAGGACATGATTCCAACG
EST: gi|78086342|gb|DV514735.1|DV514735
EST:     TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCCGTTGCT                         ACAGGTGGCTACAGTGAGGACATGATTCCAACG
genomic: TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCCGTTGCTgtatgcatca ... tgcttcgcagACAGGTGGCTACAGTGAGGACATGATTCCAACG
EST: gi|148953854|gb|EC899230.2|EC899230
EST:     TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCCGTTGCT                         ACAGGTGGCTACAGTGAGGACATGATTCCAACG
genomic: TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCCGTTGCTgtatgcatca ... tgcttcgcagACAGGTGGCTACAGTGAGGACATGATTCCAACG
EST: gi|78113800|gb|DV532189.1|DV532189
EST:     TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCCGTTGCT                         ACAGGTGGCTACAGTGAGGACATGATTCCAACG
genomic: TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCCGTTGCTgtatgcatca ... tgcttcgcagACAGGTGGCTACAGTGAGGACATGATTCCAACG
EST: gi|85152988|gb|DW587926.1|DW587926
EST:     TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCCGTCGCT                         ACAGGTGGCTACAGTGAGGACATGATTCCAACG
genomic: TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCCGTTGCTgtatgcatca ... tgcttcgcagACAGGTGGCTACAGTGAGGACATGATTCCAACG
EST: gi|211076139|gb|FL255309.1|FL255309
EST:     TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCCGTTGCT                         ACAGGTGGCTACAGTGAGGACATGATTCCAACG
genomic: TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCCGTTGCTgtatgcatca ... tgcttcgcagACAGGTGGCTACAGTGAGGACATGATTCCAACG
EST: gi|110945770|gb|EE165927.1|EE165927
EST:     TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCCGTTGCT                         ACAGGTGGCTACAGTGAGGACATGATTCCAACG
genomic: TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCCGTTGCTgtatgcatca ... tgcttcgcagACAGGTGGCTACAGTGAGGACATGATTCCAACG
EST: gi|211078874|gb|FL255313.1|FL255313
EST:     TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCTGTTGCT                         ACAGGTGGCTACAGCGAGGACATGATTCCAACG
genomic: TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCCGTTGCTgtatgcatca ... tgcttcgcagACAGGTGGCTACAGTGAGGACATGATTCCAACG
EST: gi|89760881|gb|DY689115.1|DY689115
EST:     TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCCGTTGCT                         ACAGGTGGCTACAGTGAGGACATGATTCCAACG
genomic: TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCCGTTGCTgtatgcatca ... tgcttcgcagACAGGTGGCTACAGTGAGGACATGATTCCAACG
EST: gi|38229789|gb|CF920102.1|CF920102
EST:     TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCCGTTGCT                         ACAGGTGGCTACAGTGAGGACATGATTCCAACG
genomic: TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCCGTTGCTgtatgcatca ... tgcttcgcagACAGGTGGCTACAGTGAGGACATGATTCCAACG
EST: gi|211076133|gb|FL255303.1|FL255303
EST:     TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCTGTTGCT                         ACAGGTGGCTACAGCGAGGACATGATTCCAACG
genomic: TCGTTGGGTTGCAGAATGCTGGGAAGACGTCGCTGGTCAATGCCGTTGCTgtatgcatca ... tgcttcgcagACAGGTGGCTACAGTGAGGACATGATTCCAACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attaccatgcttgattggtgttttgattctaatccatggctgctgtgcttcgcagACAGGTGGCTACAGTGAGGACATGATTCCAACG
                          ttctaat  putative branch site (score: 2)
                    ttttgatt  TA-rich tract