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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgcgttattcaaggacctagctacttggcatgttttttttctagataacaagggatgactaaattcatttggcttctgcagTTTCTCAAACTATTTTATTACAAGAACAACCTACTCAGCGGGAGCAAGGTTCTGTCATGCCTATGGATACTGCTACTGTGATAAACACAAATGCGAATGT

Basic information

species Zea mays
transcript GRMZM2G170148_T01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60358291|gb|DN225264.1|DN225264
EST:     GCCAAAACGGAAGGCAGCTCATCCATATCCCCAGAAATCATCTAAAAATG                         TTTCTCAAACTATTTTATTACAAGAACAACCTACTCAGCGGGAGCAAGGTT
genomic: GCCAAAACGGAAGGCAGCTCATCCATATCCCCAGAAATCATCTAAAAATGgtctgcgtta ... gcttctgcagTTTCTCAAACTATTTTATTACAAGAACAACCTACTCAGCGGGAGCAAGGTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggcatgttttttttctagataacaagggatgactaaattcatttggcttctgcagTTTCTCAAACTATTTTATTACAAGAACAACCTACTCAGCGGGAGCAAGGTTCTGTCATGCCTATGGATACTGCTACTGTGATAAACACAAATGCGAATGT
                              gactaaa  putative branch site (score: 2)
                                              cttctgc  putative PPT
      ttttttttctagataa  TA-rich tract