1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgaaatctgaatctgagatagactgtagaactgcattgttatctgtattatgctaatctttttggttgaaaaaatcttgcagTTTTCGTTGATGTTGCTGTTTTTGGAGACGCCAACCTTGAACTGCCCACAGCTCTATCCAATGGGTCATCTGTTGAGATCCATTTTGATCTCAGGCGAAT
species | Zea mays |
transcript | GRMZM2G167728_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGAGTGTTTGCCGACCCATTTGAGCTACAGCATTTTGTTGAGCGCAAAG TTTTCGTTGATGTTGCTGTTTTTGGAGACGCCAACCTTGAACTGCCCACAGEST: gi|78123012|gb|DV541396.1|DV541396
genomic: TGGAGTGTTTGCCGACCCATTTGAGCTACAGCATTTTGTTGAGCGCAAAGgtgaaatctg ... aatcttgcagTTTTCGTTGATGTTGCTGTTTTTGGAGACGCCAACCTTGAACTGCCCACAG
EST: TGGAGTGTTTGCCGACCCATTTGAGCTACAGCATTTTGTTGAGCGCAAAG TTTTCGTTGATGTTGCTGTTTTTGGAGACGCCAACCTTGAACTGCCCACAGEST: gi|76293670|gb|DV033238.1|DV033238
genomic: TGGAGTGTTTGCCGACCCATTTGAGCTACAGCATTTTGTTGAGCGCAAAGgtgaaatctg ... aatcttgcagTTTTCGTTGATGTTGCTGTTTTTGGAGACGCCAACCTTGAACTGCCCACAG
EST: TGGAGTGTTTGCCGACCCATTTGAGCTACAGCATTTTGTTGAGCGCAAAG TTTTCGTTGATGTTGCTGTTTTTGGAGACGCCAACCTTGAACTGCCCACAGEST: gi|76288285|gb|DV027853.1|DV027853
genomic: TGGAGTGTTTGCCGACCCATTTGAGCTACAGCATTTTGTTGAGCGCAAAGgtgaaatctg ... aatcttgcagTTTTCGTTGATGTTGCTGTTTTTGGAGACGCCAACCTTGAACTGCCCACAG
EST: TGGAGTGTTTGCCGACCCATTTGAGCTACAGCATTTTGTTGAGCGCAAAG TTTTCGTTGATGTTGCTGTTTTTGGAGACGCCAACCTTGAACTGCCCACAGEST: gi|76017739|gb|DT944909.1|DT944909
genomic: TGGAGTGTTTGCCGACCCATTTGAGCTACAGCATTTTGTTGAGCGCAAAGgtgaaatctg ... aatcttgcagTTTTCGTTGATGTTGCTGTTTTTGGAGACGCCAACCTTGAACTGCCCACAG
EST: TGGAGTGTTTGCCGACCCATTTGAGCTACAGCATTTTGTTGAGCGCAAAG TTTTCGTTGATGTTGCTGTTTTTGGAGACGCCAACCTTGAACTGCCCACAGEST: gi|50332870|gb|CO527996.1|CO527996
genomic: TGGAGTGTTTGCCGACCCATTTGAGCTACAGCATTTTGTTGAGCGCAAAGgtgaaatctg ... aatcttgcagTTTTCGTTGATGTTGCTGTTTTTGGAGACGCCAACCTTGAACTGCCCACAG
EST: TGGAGTGTTTGCCGACCCATTTGAGCTACAGCATTTTGTTGAGCGCAAAG TTTTCGTTGATGTTGCTGTTTTTGGAGACGCCACCCTTGAACTGCCCACAGEST: gi|40334613|gb|CK368683.1|CK368683
genomic: TGGAGTGTTTGCCGACCCATTTGAGCTACAGCATTTTGTTGAGCGCAAAGgtgaaatctg ... aatcttgcagTTTTCGTTGATGTTGCTGTTTTTGGAGACGCCAACCTTGAACTGCCCACAG
EST: TGGAGTGTTTGCCGACCCATTTGAGCTACAGCATTTTGTTGAGCGCAAAG TTTTCGTTGATGTTGCTGTTTTTGGAGACGCCAACCTTGAACTGCCCACAGEST: gi|78081365|gb|DV509777.1|DV509777
genomic: TGGAGTGTTTGCCGACCCATTTGAGCTACAGCATTTTGTTGAGCGCAAAGgtgaaatctg ... aatcttgcagTTTTCGTTGATGTTGCTGTTTTTGGAGACGCCAACCTTGAACTGCCCACAG
EST: GGAGTGTTTGCCGACCCCATTTGAGCTACAGCATTTTGTTGAGGGCAAAG TTTTCGTTGATGTTGCTGTTTTTGGAGACGCCAACTTTGACCTGCCCACAGEST: gi|16925257|gb|BM078325.1|BM078325
genomic: GGAGTGTTTGCCGA-CCCATTTGAGCTACAGCATTTTGTTGAGCGCAAAGgtgaaatctg ... aatcttgcagTTTTCGTTGATGTTGCTGTTTTTGGAGACGCCAACCTTGAACTGCCCACAG
EST: TGGAGTGTTTGCCGACCCATTTGAGCTACAGCATTTTGTTGAGCGCAAAG TTTTCGTTGATGTTGCTGTTTTTGGAGACGCCAACCTTGAACTGCCCACAGEST: gi|71416955|gb|DR803872.1|DR803872
genomic: TGGAGTGTTTGCCGACCCATTTGAGCTACAGCATTTTGTTGAGCGCAAAGgtgaaatctg ... aatcttgcagTTTTCGTTGATGTTGCTGTTTTTGGAGACGCCAACCTTGAACTGCCCACAG
EST: TGGAGTGTTTGCCGACCCATTTGAGCTACAGCATTTTGTTGAGCGCAAAG TTTTCGTTGATGTTGCTGTTTTTGGAGACGCCAACCTTGAACTGCCCACAGEST: gi|32827894|gb|CD967572.1|CD967572
genomic: TGGAGTGTTTGCCGACCCATTTGAGCTACAGCATTTTGTTGAGCGCAAAGgtgaaatctg ... aatcttgcagTTTTCGTTGATGTTGCTGTTTTTGGAGACGCCAACCTTGAACTGCCCACAG
EST: TGGAGTGTTTGCCGACCCATTTGAGCTACAGCATTTTGTTGAGCGCAAAG TTTTCGTTGATGTTGCTGTTTTTGGAGACGCCAACCTTGAACTGCCCACAGEST: gi|148944391|gb|EC889498.2|EC889498
genomic: TGGAGTGTTTGCCGACCCATTTGAGCTACAGCATTTTGTTGAGCGCAAAGgtgaaatctg ... aatcttgcagTTTTCGTTGATGTTGCTGTTTTTGGAGACGCCAACCTTGAACTGCCCACAG
EST: TGGAGTGTTTGCCGACCCATTTGAGCTACAGCATTTTGTTGAGCGCAAAG TTTTCGTTGATGTTGCTGTTTTTGGAGACGCCAACCTTGAACTGCCCACAGEST: gi|71432217|gb|DR813267.1|DR813267
genomic: TGGAGTGTTTGCCGACCCATTTGAGCTACAGCATTTTGTTGAGCGCAAAGgtgaaatctg ... aatcttgcagTTTTCGTTGATGTTGCTGTTTTTGGAGACGCCAACCTTGAACTGCCCACAG
EST: TGGAGTGTTTGCCGACCCATTTGAGCTACAGCATTTTGTTGAGCGCAAAG TTTTCGTTGATGTTGCTGTTTTTGGAGACGCCAACCTTGAACTGCCCACAG
genomic: TGGAGTGTTTGCCGACCCATTTGAGCTACAGCATTTTGTTGAGCGCAAAGgtgaaatctg ... aatcttgcagTTTTCGTTGATGTTGCTGTTTTTGGAGACGCCAACCTTGAACTGCCCACAG
gaactgcattgttatctgtattatgctaatctttttggttgaaaaaatcttgcagTTTTCGTTGATGTTGCTGTTTTTGGAGACGCCAACCTTGAACTGCCCACAGCTCTATCCAATGGGTCATCTGTTGAGATCCATTTTGATCTCAGGCGAAT
tgctaat putative branch site (score: 2)
taatcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaaatctgaatctgagatagactgtagaactgcattgttatctgtattatgctaatctttttggttgaaaaaatcttgcagTTTTCGTTGATGTTGCTGTTTTTGGAGACGCCAACCTTGAACTGCCCACAGCTCTATCCAATGGGTCATCTGTTGAGATCCATTTTGATCTCAGGCGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC