1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gtggggttgagcaaccattgaattctagggtctatgctatcatgctatgggtcttgtcttgcagacattttggatgttgactttgttcttttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGTGGATTGGCCACCCAAGATTTGAGCTCATCCGTCATG
species | Zea mays |
transcript | GRMZM2G165357_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|32829264|gb|CD968942.1|CD968942
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGTACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAATTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|211377009|gb|FL406724.1|FL406724
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTAGACNAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|149065532|gb|EE286652.2|EE286652
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|32787712|gb|CD936614.1|CD936614
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGG-TCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|211139565|gb|FL400395.1|FL400395
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|211364308|gb|FL429333.1|FL429333
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|211225658|gb|FL394160.1|FL394160
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|211102135|gb|FL378499.1|FL378499
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|32829447|gb|CD969125.1|CD969125
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|211513418|gb|FL378838.1|FL378838
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|211182716|gb|FL410032.1|FL410032
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|32914071|gb|CF018883.1|CF018883
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|211479897|gb|FL423797.1|FL423797
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|211264125|gb|FL402706.1|FL402706
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|211355257|gb|FL372995.1|FL372995
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|211057982|gb|FL426572.1|FL426572
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTAGACNAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|60394382|gb|DN227252.1|DN227252
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: CTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|71444250|gb|DR825300.1|DR825300
genomic: CTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|149082965|gb|EE172201.2|EE172201
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|71449953|gb|DR831003.1|DR831003
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|211143536|gb|FL424879.1|FL424879
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|211479918|gb|FL425086.1|FL425086
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|32797525|gb|CD949761.1|CD949761
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|211084498|gb|FL378036.1|FL378036
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|32796729|gb|CD948965.1|CD948965
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|149070980|gb|EE159385.2|EE159385
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACTAGTTCAAAAGACAACCTGAAGAAGEST: gi|60339871|gb|DN206844.1|DN206844
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: GCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|32799379|gb|CD951615.1|CD951615
genomic: GCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|211441206|gb|FL381374.1|FL381374
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|32798044|gb|CD950280.1|CD950280
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|211021925|gb|FL369377.1|FL369377
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|211108221|gb|FL373168.1|FL373168
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|149070503|gb|EE158907.2|EE158907
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|211042612|gb|FL405104.1|FL405104
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGEST: gi|211535769|gb|FL372741.1|FL372741
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
tatgggtcttgtcttgcagacattttggatgttgactttgttcttttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGTGGATTGGCCACCCAAGATTTGAGCTCATCCGTCATG
tgttgac putative branch site (score: 1267)
ctttgttcttttac CT-rich tract
ttctttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggggttgagcaaccattgaattctagggtctatgctatcatgctatgggtcttgtcttgcagacattttggatgttgactttgttcttttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGTGGATTGGCCACCCAAGATTTGAGCTCATCCGTCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - gcaacca
- - - - - - - - - - - - - - - -ctatgct
- - - - - - - - - - - - - - - - - - - - catgcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tcttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgttga