Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agttagctcaatgcatttctttcagtgtaatcaaaggtagatggattcttattttgataaccaattaaaagttcgaatgttttactaacaatcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG

Basic information

species Zea mays
transcript GRMZM2G159397_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G159397_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os08g41950.2 (Oryza sativa), 3'ss of exon 3
agttagctcaatgcatttctttcagtgtaatcaaaggtagatggattcttattttgata---ac-caattaaaagt-tcgaatgttttactaacaatcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG
      ||  ||   | |  |||| | || | |  |  ||  | | ||| ||||| |||   ||  || ||| | | |   |    |   |    |      ||| || ||||| |||||||||||||| |||||||||||||||||||| |||  ||| ||||||||||| ||||| ||| |||||||| | ||| ||||||||
-----acttcatttttgtacttcaatatagtaattgaaagtggaagtctaattttcatatgtacataactaatactcttctacccctatgtgtggactatgacagAAATTTGCTGGGTGAAGATCTTGATTCATTAGGCATAAAAGAGCTCGAGAGCCTAGAGAAGCAGCTTGATTCATCCCTGAAGCACGTCAGAACTACAAGG

upper sequence: GRMZM2G159397_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA05G28140.2 (Glycine max), 3'ss of exon 3
----agttagctcaatgcat-ttctttcagtgtaatcaaaggtagatggattcttattttgataaccaattaaaagttcgaatgttttactaa----caatcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG
     | |  |  | ||    ||||   | | |     |   |  || | ||  || | | ||| |  ||  ||   |    |||| || | |      | || ||||||||| |  | || ||||||||||   | ||| |||  |||||||| |||   || || | |||||| ||||||||||||||||| |||||||| || |||
gtacggatgccctattgggccttctaataatatggctcataatt-attggttgatactat-atagc--atcgaagaattttgtgttgtatttaacttttaccctctcagGAACCTTATGGGAGAAGATCTTGGTCCTTTAAGCAGCAAAGAGCTCGAGTCTCTTGAAAGGCAGCTAGATTCGTCCTTGAAGCAAATAAGATCAACCAGG

upper sequence: GRMZM2G159397_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA08G11120.1 (Glycine max), 3'ss of exon 3
agttagctcaatgcatttctttca--gtgtaatcaaaggtagatggattctt--attttgataaccaattaaaagttcgaatgttttactaaca--atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG
    |  |   || | | || | |  ||| ||       ||    || | |   |  |  ||| |||  | || |||    | ||| |||||    | || | ||||||| |  | || ||||||||||   | ||| |||  ||||||||||||   || || | |||||| ||||||||||||||||| |||||||| ||||||
---aaattttttgaaatgctataaaagtgcaagatgtaataataagagtgtggaaaataaatacccatctcaatgtt---gtatttaactaattttaccctcccagGAACCTTATGGGAGAAGATCTTGGCCCTTTAAGCAGCAAAGAGCTGGAGTCTCTTGAAAGGCAGCTAGATTCGTCCTTGAAGCAAATAAGATCAACAAGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74241219|gb|DT649133.1|DT649133
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|78180034|gb|DV550407.1|DV550407
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|32845828|gb|CD985509.1|CD985509
EST:     GTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|211012495|gb|FL323158.1|FL323158
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGARCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|32846013|gb|CD985694.1|CD985694
EST:     TACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: TACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|148949380|gb|EC894836.2|EC894836
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|76284475|gb|DV024043.1|DV024043
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|6918768|gb|AW400298.1|AW400298
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|211231580|gb|FL030120.1|FL030120
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTA
EST: gi|211509214|gb|FL030119.1|FL030119
EST:     GAGTACCTCAAACTGAAGGCMCGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCT
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCT
EST: gi|93282622|gb|EB674886.1|EB674886
EST:     AGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTACAA-G                         GAACTTGCTTGGTGAAGATCTTGAGTCTTTAGGCATATAAGAGCTGGAGC
genomic: AGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACT-CAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGC
EST: gi|67042829|gb|CO469084.1|CO469084
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|50338493|gb|CO533619.1|CO533619
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTG
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTG
EST: gi|101398167|gb|EB820957.1|EB820957
EST:     GAGTACTTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTGGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|67010834|gb|CO439583.1|CO439583
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|71772521|gb|DR970452.1|DR970452
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|32847389|gb|CD987070.1|CD987070
EST:     ACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: ACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|88756808|gb|DY540949.1|DY540949
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCCTTATGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|89247844|gb|DY619630.1|DY619630
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|76291286|gb|DV030854.1|DV030854
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|148951163|gb|EC896843.2|EC896843
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|74236154|gb|DT644068.1|DT644068
EST:     GAGTACCTCAGACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAAGAGCTGGAGC
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAA-GAGCTGGAGC
EST: gi|32848283|gb|CD987964.1|CD987964
EST:     GTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|32845979|gb|CD985660.1|CD985660
EST:     GTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|149078371|gb|EE167144.2|EE167144
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|6918466|gb|AW399996.1|AW399996
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|109637403|gb|EC590948.1|EC590948
EST:     GTACCTCAAACTGGAAGGCACGTGCTTGATAATTTACNGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GTACCTCAAACTG-AAGGCACGTG-TTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|78093002|gb|DV521376.1|DV521376
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|148951164|gb|EC896844.2|EC896844
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|78093003|gb|DV521377.1|DV521377
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|76284474|gb|DV024042.1|DV024042
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|71757422|gb|DR955359.1|DR955359
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|67010653|gb|CO439402.1|CO439402
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|50338891|gb|CO534017.1|CO534017
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|32845975|gb|CD985656.1|CD985656
EST:     GTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|32867990|gb|CF007672.1|CF007672
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|109179245|gb|EC379888.1|EC379888
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|149098430|gb|EE184409.2|EE184409
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|149077648|gb|EE166352.2|EE166352
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|32847364|gb|CD987045.1|CD987045
EST:     CTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: CTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|211509211|gb|FL030116.1|FL030116
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGC-GACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|149105410|gb|EE290922.2|EE290922
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|78111103|gb|DV529500.1|DV529500
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|67029631|gb|CO458380.1|CO458380
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|148995802|gb|EE035033.2|EE035033
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|32845953|gb|CD985634.1|CD985634
EST:     ACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: ACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|67017342|gb|CO446091.1|CO446091
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|149105409|gb|EE290921.2|EE290921
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|76019607|gb|DT946777.1|DT946777
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|62525802|gb|DN828450.1|DN828450
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|50338644|gb|CO533770.1|CO533770
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|32866045|gb|CF005727.1|CF005727
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|149081319|gb|EE170433.2|EE170433
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|76291287|gb|DV030855.1|DV030855
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|149098431|gb|EE184410.2|EE184410
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|91874357|gb|EB404314.1|EB404314
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|148931272|gb|EC874097.2|EC874097
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|32847609|gb|CD987290.1|CD987290
EST:     TACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: TACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|148995435|gb|EE034634.2|EE034634
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|148950935|gb|EC896570.2|EC896570
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|211229523|gb|FL030115.1|FL030115
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|148950936|gb|EC896571.2|EC896571
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|149110047|gb|EE293860.2|EE293860
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|67019373|gb|CO448122.1|CO448122
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|67010697|gb|CO439446.1|CO439446
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|88757755|gb|DY541896.1|DY541896
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|71757423|gb|DR955360.1|DR955360
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|211112421|gb|FL337494.1|FL337494
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|50338743|gb|CO533869.1|CO533869
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTG
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTG
EST: gi|149078369|gb|EE167143.2|EE167143
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGGGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|32857599|gb|CD997280.1|CD997280
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|108824286|gb|EC278294.1|EC278294
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|67026224|gb|CO454973.1|CO454973
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|108953949|gb|EC364944.1|EC364944
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|148949381|gb|EC894837.2|EC894837
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|32847327|gb|CD987008.1|CD987008
EST:     GTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|67013405|gb|CO442154.1|CO442154
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTCAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCA
EST: gi|6127229|gb|AW129875.1|AW129875
EST:     GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAG                         GAACTTGCTTGGTGAAGATCTTGAG
genomic: GAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 3 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 349

CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG


Block sizes: 18 (upstream exon), 41 (downstream exon)
Score: 3

CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 668

CAACTGAAAAGTAGCCGCAATGAGTACCTCAAACTGAAGGCACGTGTTGATAATTTACAGCGGACTCAAAGgtgagttctg ... atcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttattttgataaccaattaaaagttcgaatgttttactaacaatcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG
                                     tactaac  putative branch site (score: 668)
                                              tcccctc  putative PPT
           ataaccaattaaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agttagctcaatgcatttctttcagtgtaatcaaaggtagatggattcttattttgataaccaattaaaagttcgaatgttttactaacaatcccctcagGAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC