1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tatatgtcatatgtgtaaagtgaatttgttggtgggctctagttcactaatttgttgtatttactaatgtaccgttgcttacagcttgttatcttattagGTTGCTTGGGCATTGTGGATGGTGATGATGTTGAATTGAATAATCTTCATCGACAG
species | Zea mays |
transcript | GRMZM2G157836_T05 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGAGGTTTGGGCTCTCCCCTGGCATTGTATCTAGCAGCTTGTGGTGTCG GTTGCTTGGGCATTGTGGATGGTGATGATGTTGAATTGAATAATCTTCATCEST: gi|101400847|gb|EB822121.1|EB822121
genomic: TGGAGGTTTGGGCTCTCCCCTGGCATTGTATCTAGCAGCTTGTGGTGTCGgtaattttct ... atcttattagGTTGCTTGGGCATTGTGGATGGTGATGATGTTGAATTGAATAATCTTCATC
EST: TGGAGGTTTGGGCTCTCCCCTGGCATTGTATCTAGCAGCTTGTGGTGTCG GTTGCTTGGGCATTGTGGATGGTGATGATGTTGAATTGAATAATCTTEST: gi|71445496|gb|DR826546.1|DR826546
genomic: TGGAGGTTTGGGCTCTCCCCTGGCATTGTATCTAGCAGCTTGTGGTGTCGgtaattttct ... atcttattagGTTGCTTGGGCATTGTGGATGGTGATGATGTTGAATTGAATAATCTT
EST: TGGAGGTTTGGGCTCTCCCCTGGCATTGTATCTAGCAGCTTGTGGTGTCG GTTGCTTGGGCATTGTGGATGGTGATGATGTTGAATTGAATAATCTTCATC
genomic: TGGAGGTTTGGGCTCTCCCCTGGCATTGTATCTAGCAGCTTGTGGTGTCGgtaattttct ... atcttattagGTTGCTTGGGCATTGTGGATGGTGATGATGTTGAATTGAATAATCTTCATC
actaatttgttgtatttactaatgtaccgttgcttacagcttgttatcttattagGTTGCTTGGGCATTGTGGATGGTGATGATGTTGAATTGAATAATCTTCATCGACAG
ttatctt CT-rich tract
ttgtatttactaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatatgtcatatgtgtaaagtgaatttgttggtgggctctagttcactaatttgttgtatttactaatgtaccgttgcttacagcttgttatcttattagGTTGCTTGGGCATTGTGGATGGTGATGATGTTGAATTGAATAATCTTCATCGACAG
- - - - - - - - - - - - tttgttg
- - - - - - - - - - - - - tgttggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttac