1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagtggacaaattgccattacccaaatcaacataaattcactagttgctggtatcgaattttatcatgtctcttgccacactaatactgaactgttgtatgtaccattaatcatgcatgtgcagAAATATGATCTTGATCCTGCCGCAAAGGCTGCAGCAGCTTCAGTTTTGGCATCTAAGCTTGGGGAGGACACTGGCTTAAAAGTTCATGTTGGAGAAGAAC
species | Zea mays |
transcript | GRMZM2G153332_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGAGCTTAAAGAGAGAACAAACTATTATCTTACCCAACAGCTTATTCAG AAATATGATCTTGATCCTGCCGCAAAGGCTGCAGCAGCTTCAGTTTTGGCAEST: gi|32941845|gb|CF046664.1|CF046664
genomic: ATGAGCTTAAAGAGAGAACAAACTATTATCTTACCCAACAGCTTATTCAGgtaagtggac ... gcatgtgcagAAATATGATCTTGATCCTGCCGCAAAGGCTGCAGCAGCTTCAGTTTTGGCA
EST: ATGAGCTTAAAGAGAGAACAAACTATTATCTTACCCAACAGCTTATTCAG AAATATGATCTTGATCCTGCCGCAAAGGCTGCAGCAGCTTCAGTTTTGGCAEST: gi|71299580|gb|DR785804.1|DR785804
genomic: ATGAGCTTAAAGAGAGAACAAACTATTATCTTACCCAACAGCTTATTCAGgtaagtggac ... gcatgtgcagAAATATGATCTTGATCCTGCCGCAAAGGCTGCAGCAGCTTCAGTTTTGGCA
EST: ATGAGCTTAAAGAGAGAACAAACTATTATCTTACCCAACAGCTTATTCAG AAATATGATCTTGATCCTGCCGCAAAGGCTGCAGCAGCTTCAGTTTTGGCAEST: gi|78115933|gb|DV534321.1|DV534321
genomic: ATGAGCTTAAAGAGAGAACAAACTATTATCTTACCCAACAGCTTATTCAGgtaagtggac ... gcatgtgcagAAATATGATCTTGATCCTGCCGCAAAGGCTGCAGCAGCTTCAGTTTTGGCA
EST: ATGAGCTTAAAGAGAGAACAAACTATTATCTTACCCAACAGCTTATTCAG AAATATGATCTTGEST: gi|94477187|gb|EB706145.1|EB706145
genomic: ATGAGCTTAAAGAGAGAACAAACTATTATCTTACCCAACAGCTTATTCAGgtaagtggac ... gcatgtgcagAAATATGATCTTG
EST: ATGAGCTTAAAGAGAGAACAAACTATTATCTTACCCAACAGCTTATTCAG AAATATGATCTTGATCCTGCCGCAAAGGCTGCAGCAGCTTCAGTTTTGGCAEST: gi|148957123|gb|EC903107.2|EC903107
genomic: ATGAGCTTAAAGAGAGAACAAACTATTATCTTACCCAACAGCTTATTCAGgtaagtggac ... gcatgtgcagAAATATGATCTTGATCCTGCCGCAAAGGCTGCAGCAGCTTCAGTTTTGGCA
EST: ATGAGCTTAAAGAGAGAACAAACTATTATCTTACCCAACAGCTTATTCAG AAATATGATCTTGATCCTGCCGCAAAGGCTGCAGCAGCTTCAGTTTTGGCA
genomic: ATGAGCTTAAAGAGAGAACAAACTATTATCTTACCCAACAGCTTATTCAGgtaagtggac ... gcatgtgcagAAATATGATCTTGATCCTGCCGCAAAGGCTGCAGCAGCTTCAGTTTTGGCA
ctcttgccacactaatactgaactgttgtatgtaccattaatcatgcatgtgcagAAATATGATCTTGATCCTGCCGCAAAGGCTGCAGCAGCTTCAGTTTTGGCATCTAAGCTTGGGGAGGACACTGGCTTAAAAGTTCATGTTGGAGAAGAAC
attaatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtggacaaattgccattacccaaatcaacataaattcactagttgctggtatcgaattttatcatgtctcttgccacactaatactgaactgttgtatgtaccattaatcatgcatgtgcagAAATATGATCTTGATCCTGCCGCAAAGGCTGCAGCAGCTTCAGTTTTGGCATCTAAGCTTGGGGAGGACACTGGCTTAAAAGTTCATGTTGGAGAAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC