1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatgcagttgtggctgagcatctgttttctcgcactcatattcttagtctcttctttatctggccaagattttgtgacctttcttgtgttgtggtagcactgaatttcttcatattgcagGTGTGTTTTCTTCCTGGTACCCTTGCTCTTGGTGCAACTAAAGGTATCACCAAGAGAAAAGCTCTTGAGACTAATTTGTTAACTGATGAAGATATAGAAA
species | Zea mays |
transcript | GRMZM2G150201_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGCTTCCATTTGGACGAAATGGCGGGTTTAGTCCTAAAATGGATCACCTG GTGTGTTTTCTTCCTGGTACCCTTGCTCTTGGTGCAACTAAAGGTATCACCEST: gi|33095755|gb|CF055749.1|CF055749
genomic: AGCTTCCATTTGGACGAAATGGCGGGTTTAGTCCTAAAATGGATCACCTGgtatgcagtt ... catattgcagGTGTGTTTTCTTCCTGGTACCCTTGCTCTTGGTGCAACTAAAGGTATCACC
EST: AGCTTCCATTTGGACGAAATGGTGGGTTTAGTCCTAAAATGGATCACCTG GTGTGTTTTCTTCCTGGTEST: gi|74233685|gb|DT641599.1|DT641599
genomic: AGCTTCCATTTGGACGAAATGGCGGGTTTAGTCCTAAAATGGATCACCTGgtatgcagtt ... catattgcagGTGTGTTTTCTTCCTGGT
EST: AGCTTCCATTTGGACGAAATGGCGGGTTTAGTCCTAAAATGGATCACCTG GTGTGTTTTCTTCCTGGTACCCTTGCTCTTGGTGCAACTAAAGGTATCACC
genomic: AGCTTCCATTTGGACGAAATGGCGGGTTTAGTCCTAAAATGGATCACCTGgtatgcagtt ... catattgcagGTGTGTTTTCTTCCTGGTACCCTTGCTCTTGGTGCAACTAAAGGTATCACC
aagattttgtgacctttcttgtgttgtggtagcactgaatttcttcatattgcagGTGTGTTTTCTTCCTGGTACCCTTGCTCTTGGTGCAACTAAAGGTATCACCAAGAGAAAAGCTCTTGAGACTAATTTGTTAACTGATGAAGATATAGAAA
tttcttcat CT-rich tract
aatttcttcatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcagttgtggctgagcatctgttttctcgcactcatattcttagtctcttctttatctggccaagattttgtgacctttcttgtgttgtggtagcactgaatttcttcatattgcagGTGTGTTTTCTTCCTGGTACCCTTGCTCTTGGTGCAACTAAAGGTATCACCAAGAGAAAAGCTCTTGAGACTAATTTGTTAACTGATGAAGATATAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA