1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaaagactgggaatattgtttaactttcttggtctcttctaacaggattctttctgctgaaaggataccagtaacttagacatgctcactagtcttgttgttttagGTTGCAAAAATTGAAACTGAGAAAATGCTTATTAGCATGGTGGAAACTGAACTGGAGAAGAGAAAAGCTGAGGGGAGATACTCTGCACATTTCAGAGGAC
species | Zea mays |
transcript | GRMZM2G143862_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTATTCAGGAGCAACTTATGCTTGAAAGAGATCCCCATGGCAATGTTCAG GTTGCAAAAATTGAAACTGAGAAAATGCTTATTAGCATGGTGGAAACTGAAEST: gi|211507305|gb|FK969872.1|FK969872
genomic: CTATTCAGGAGCAACTTATGCTTGAAAGAGATCCCCATGGCAATGTTCAGgtaaagactg ... gttgttttagGTTGCAAAAATTGAAACTGAGAAAATGCTTATTAGCATGGTGGAAACTGAA
EST: CTATTCAGGAGCAACTTATGCTTGAAAGAGATCCCCATGGCAATGTTCAG GTTGCAAAAATTGAAACTGAGAAAATGCTTATTAGCATGGTGGAAACTGAAEST: gi|32932722|gb|CF037534.1|CF037534
genomic: CTATTCAGGAGCAACTTATGCTTGAAAGAGATCCCCATGGCAATGTTCAGgtaaagactg ... gttgttttagGTTGCAAAAATTGAAACTGAGAAAATGCTTATTAGCATGGTGGAAACTGAA
EST: CTATTCAGGAGCAACTTATGCTTGAAAGAGATCCCCATGGCAATGTTCAG GTTGCAAAAATTGAAACTGAGAAAATGCTTATTAGCATGGTGGAAACTGAAEST: gi|213170617|gb|FM193174.1|FM193174
genomic: CTATTCAGGAGCAACTTATGCTTGAAAGAGATCCCCATGGCAATGTTCAGgtaaagactg ... gttgttttagGTTGCAAAAATTGAAACTGAGAAAATGCTTATTAGCATGGTGGAAACTGAA
EST: CTATTCAGGAGCAACTTATGCTTGAAAGAGATCCCCATGGCAATGTTCAA GTTGCAAAAATTGAAACTGAGAAAATGCTTATTAGCATGGTGGAAACTGAAEST: gi|148934427|gb|EC878461.2|EC878461
genomic: CTATTCAGGAGCAACTTATGCTTGAAAGAGATCCCCATGGCAATGTTCAGgtaaagactg ... gttgttttagGTTGCAAAAATTGAAACTGAGAAAATGCTTATTAGCATGGTGGAAACTGAA
EST: CTTATGCTTGAAAGAGATCCCCATGGCAATGTTCAG GTTGCAAAAATTGAAACTGAGAAAATGCTTATTAGCATGGTGGAAACTGAAEST: gi|67023546|gb|CO452295.1|CO452295
genomic: CTTATGCTTGAAAGAGATCCCCATGGCAATGTTCAGgtaaagactg ... gttgttttagGTTGCAAAAATTGAAACTGAGAAAATGCTTATTAGCATGGTGGAAACTGAA
EST: TGGCAATGTTCAG GTTGC-AAAATTG-AACTGAGAAAA-GCTTATTAGCATGGTGGAAACTGAAEST: gi|37398696|gb|CF636665.1|CF636665
genomic: TGGCAATGTTCAGgtaaagactg ... gttgttttagGTTGCAAAAATTGAAACTGAGAAAATGCTTATTAGCATGGTGGAAACTGAA
EST: GGCAATGTTCAG GTCGCAAAAATTGAAACTGAGAAAATGCTTATTAGCATGGTGGAAACTGAAEST: gi|211507302|gb|FK969869.1|FK969869
genomic: GGCAATGTTCAGgtaaagactg ... gttgttttagGTTGCAAAAATTGAAACTGAGAAAATGCTTATTAGCATGGTGGAAACTGAA
EST: CTATTCAGGAGCAACTTATGCTTGAAAGAGATCCCCATGGCAATGTTCAG GTTGCAAAAATTGAAACTGAGAAAATGCTTATTAGCATGGTGGAAACTGAAEST: gi|67015451|gb|CO444200.1|CO444200
genomic: CTATTCAGGAGCAACTTATGCTTGAAAGAGATCCCCATGGCAATGTTCAGgtaaagactg ... gttgttttagGTTGCAAAAATTGAAACTGAGAAAATGCTTATTAGCATGGTGGAAACTGAA
EST: CTATTCAGGAGCAACTTATGCTTGAAAGAGATCCCCATGGCAATGTTCAG GTTGCAAAAATTGAAACTGAGAAAATGCTTATTAGCATGGTGGAAACTGAAEST: gi|67024935|gb|CO453684.1|CO453684
genomic: CTATTCAGGAGCAACTTATGCTTGAAAGAGATCCCCATGGCAATGTTCAGgtaaagactg ... gttgttttagGTTGCAAAAATTGAAACTGAGAAAATGCTTATTAGCATGGTGGAAACTGAA
EST: GAGATCCCCTTGCGCAATGTTCAG GTTGCAAAAATTGAAACTGAGAAAATGCTTATTAGCATGGTGGAAACTGAAEST: gi|211182047|gb|FL030523.1|FL030523
genomic: GAGATCCCCATG-GCAATGTTCAGgtaaagactg ... gttgttttagGTTGCAAAAATTGAAACTGAGAAAATGCTTATTAGCATGGTGGAAACTGAA
EST: CTATTCAGGAGCAACTTATGCTTGAAAGAGATCCCCATGGCAATGTTCAG GTTGCAAAAATTGAAACTGAGAAAATGCTTATTAGCATGGTGGAAACTGAAEST: gi|60343399|gb|DN210372.1|DN210372
genomic: CTATTCAGGAGCAACTTATGCTTGAAAGAGATCCCCATGGCAATGTTCAGgtaaagactg ... gttgttttagGTTGCAAAAATTGAAACTGAGAAAATGCTTATTAGCATGGTGGAAACTGAA
EST: CCCCATGGCAATGTTCAG GTTGCAAAAA-TGAAAACTGAGAAAATGCTTATTAGCATGGTGGAAACTGAEST: gi|67012343|gb|CO441092.1|CO441092
genomic: CCCCATGGCAATGTTCAGgtaaagactg ... gttgttttagGTTGCAAAAATTG-AAACTGAGAAAATGCTTATTAGCATGGTGGAAACTGA
EST: CTATTCAGGAGCAACTTATGCTTGAAAGAGATCCCCATGGCAATGTTCAG GTTGCAAAAATTGAAACTGAGAAAATGCTTATTAGCATGGTGGAAACTGAAEST: gi|211507300|gb|FK969867.1|FK969867
genomic: CTATTCAGGAGCAACTTATGCTTGAAAGAGATCCCCATGGCAATGTTCAGgtaaagactg ... gttgttttagGTTGCAAAAATTGAAACTGAGAAAATGCTTATTAGCATGGTGGAAACTGAA
EST: CTATTCAGGAGCAACTTATGCTTGAAAGAGATCCCCATGGCAATGTTCAG GTTGCAAAAATTGAAACTGAGAAAATGCTTATTAGCATGGTGGAAACTGAAEST: gi|87155550|gb|DY400339.1|DY400339
genomic: CTATTCAGGAGCAACTTATGCTTGAAAGAGATCCCCATGGCAATGTTCAGgtaaagactg ... gttgttttagGTTGCAAAAATTGAAACTGAGAAAATGCTTATTAGCATGGTGGAAACTGAA
EST: CTATTCAGGAGCAACTTATGCTTGAAAGAGATCCCCATGGCAATGTTCAG GTTGCAAAAATTGAAACTGAGAAAATGCTTATTAGCATGGTGGAAACTGAAEST: gi|32930610|gb|CF035422.1|CF035422
genomic: CTATTCAGGAGCAACTTATGCTTGAAAGAGATCCCCATGGCAATGTTCAGgtaaagactg ... gttgttttagGTTGCAAAAATTGAAACTGAGAAAATGCTTATTAGCATGGTGGAAACTGAA
EST: CTATTCAGGAGCAACTTATGCTTGAAAGAGATCCCCATGGCAATGTTCAG GTTGCAAAAATTGAAACTGAGAAAATGCTTATTAGCATGGTGGAAACTGAAEST: gi|166703126|gb|EG174627.1|EG174627
genomic: CTATTCAGGAGCAACTTATGCTTGAAAGAGATCCCCATGGCAATGTTCAGgtaaagactg ... gttgttttagGTTGCAAAAATTGAAACTGAGAAAATGCTTATTAGCATGGTGGAAACTGAA
EST: CAACTTATGCTTGAAAGAGATCCCCATGGCAATGTTCAG GTTGCAAAA-TTGAAACTGAGAAA-TGCTTATTAGCATGGTGGAAACTGAAEST: gi|26558921|gb|CA831156.1|CA831156
genomic: CAACTTATGCTTGAAAGAGATCCCCATGGCAATGTTCAGgtaaagactg ... gttgttttagGTTGCAAAAATTGAAACTGAGAAAATGCTTATTAGCATGGTGGAAACTGAA
EST: CTATTCAGGAGCAACTTATGCTTGAAAGAGATCCCCATGGCAATGTTCAG GTTGCAAAAATTGAAACTGAGAAAATGCTTATTAGCATGGTGGAAACTGAAEST: gi|211507306|gb|FK969873.1|FK969873
genomic: CTATTCAGGAGCAACTTATGCTTGAAAGAGATCCCCATGGCAATGTTCAGgtaaagactg ... gttgttttagGTTGCAAAAATTGAAACTGAGAAAATGCTTATTAGCATGGTGGAAACTGAA
EST: CTATTCAGGAGCAACTTATGCTTGAAAGAGATCCCCATGGCAATGTTCAG GTTGCAAAAATTGAAACTGAGAAAATGCTTATTAGCATGGTGGAAACTGAA
genomic: CTATTCAGGAGCAACTTATGCTTGAAAGAGATCCCCATGGCAATGTTCAGgtaaagactg ... gttgttttagGTTGCAAAAATTGAAACTGAGAAAATGCTTATTAGCATGGTGGAAACTGAA
ttctgctgaaaggataccagtaacttagacatgctcactagtcttgttgttttagGTTGCAAAAATTGAAACTGAGAAAATGCTTATTAGCATGGTGGAAACTGAACTGGAGAAGAGAAAAGCTGAGGGGAGATACTCTGCACATTTCAGAGGAC
tgctcac putative branch site (score: 369)
tcttgtt putative PPT
ttgtttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagactgggaatattgtttaactttcttggtctcttctaacaggattctttctgctgaaaggataccagtaacttagacatgctcactagtcttgttgttttagGTTGCAAAAATTGAAACTGAGAAAATGCTTATTAGCATGGTGGAAACTGAACTGGAGAAGAGAAAAGCTGAGGGGAGATACTCTGCACATTTCAGAGGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA