1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttatttgcctttcctcatttccattgtatctattaaccagaaaatgaatgaggtgcctgtggatgcattttgaaatgtgactgttttctttgttctccagTCATACCTCTACCAGATACTCCGTGGCGTTGCGTACTGCCATTCTCATAGAGTTCTTCACCGAGATTTGAAACCTCAGAACTTGTTGATAGATCGGCGTA
species | Zea mays |
transcript | GRMZM2G143213_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGTTCATGGACTCTTGCCCGGAGTTTGCTAAGAATCCCACTTTGATTAAG TCATACCTCTACCAGATACTCCGTGGTGTTGCGTACTGCCATTCTCATAGAEST: gi|21390004|gb|BQ528053.1|BQ528053
genomic: AGTTCATGGACTCTTGCCCGGAGTTTGCTAAGAATCCCACTTTGATTAAGgtgaagaagc ... tgttctccagTCATACCTCTACCAGATACTCCGTGGCGTTGCGTACTGCCATTCTCATAGA
EST: AGTTCATGGACTCTTGCCCGGAGTTTGCTAAGAATCCCACTTTGATTAAG TCATACCTCTACCAGATACTCCGTGGCGTTGCGTACTGCCATTCTCATAGAEST: gi|60397283|gb|DN230099.1|DN230099
genomic: AGTTCATGGACTCTTGCCCGGAGTTTGCTAAGAATCCCACTTTGATTAAGgtgaagaagc ... tgttctccagTCATACCTCTACCAGATACTCCGTGGCGTTGCGTACTGCCATTCTCATAGA
EST: AGTTCATGGACTCTTGCCCGGAGTTTGCTAAGAATCCCACTTTGATTAAG TCATACCTCTACCAGATACTCCGTGGCGTTGCGTACTGCCATTCTCATAGAEST: gi|6020558|gb|AW065591.1|AW065591
genomic: AGTTCATGGACTCTTGCCCGGAGTTTGCTAAGAATCCCACTTTGATTAAGgtgaagaagc ... tgttctccagTCATACCTCTACCAGATACTCCGTGGCGTTGCGTACTGCCATTCTCATAGA
EST: AGTTCATGGACTCTTGCCCGGAGTTTGCTAAGAATCCCACTTTGATTAAG TCATACCTCTACCAGATACTCCGTGGTGTTGCGTACTGCCATTCTCATAGAEST: gi|67024512|gb|CO453261.1|CO453261
genomic: AGTTCATGGACTCTTGCCCGGAGTTTGCTAAGAATCCCACTTTGATTAAGgtgaagaagc ... tgttctccagTCATACCTCTACCAGATACTCCGTGGCGTTGCGTACTGCCATTCTCATAGA
EST: AAGAATCCTACTTTGATTAAG TCATACCTCTACCAGATACTCCGTGGCGTTGCGTACTGCCATTCTCATAGAEST: gi|22542162|gb|BU092600.1|BU092600
genomic: AAGAATCCCACTTTGATTAAGgtgaagaagc ... tgttctccagTCATACCTCTACCAGATACTCCGTGGCGTTGCGTACTGCCATTCTCATAGA
EST: AGTTCATGGACTCTTGCCCGGAGTTTGCTAAGAATCCCACTTTGATTAAG TCATACCTCTACCAGATACTCCGTGGCGTTGCGTACTGCCATTCTCATAGAEST: gi|5847313|gb|AW000392.1|AW000392
genomic: AGTTCATGGACTCTTGCCCGGAGTTTGCTAAGAATCCCACTTTGATTAAGgtgaagaagc ... tgttctccagTCATACCTCTACCAGATACTCCGTGGCGTTGCGTACTGCCATTCTCATAGA
EST: AGTTCATGGACTCTTGCCCGGAGTTTGCTAAGAATCCCACTTTGATTAAG TCATACCTCTACCAGATACTCCGTGGTGTTGCGTACTGCCATTCTCATAGAEST: gi|32916297|gb|CF021109.1|CF021109
genomic: AGTTCATGGACTCTTGCCCGGAGTTTGCTAAGAATCCCACTTTGATTAAGgtgaagaagc ... tgttctccagTCATACCTCTACCAGATACTCCGTGGCGTTGCGTACTGCCATTCTCATAGA
EST: GGACTCTTGCCCGGAGTTTGCTAAGAATCCCACTTTGATTAAG TCATACCTCTACCAGATACTCCGTGGCGTTGCGTACTGCCATTCTCATAGAEST: gi|78093070|gb|DV521444.1|DV521444
genomic: GGACTCTTGCCCGGAGTTTGCTAAGAATCCCACTTTGATTAAGgtgaagaagc ... tgttctccagTCATACCTCTACCAGATACTCCGTGGCGTTGCGTACTGCCATTCTCATAGA
EST: TCATGGACTCTTGCCCGGAGTTTGCTAAGAATCCCACTTTGATTAAG TCATACCTCTACCAGATACTCCGTGGCGTTGCGTACTGCCATTCTCATAGAEST: gi|60398446|gb|DN231262.1|DN231262
genomic: TCATGGACTCTTGCCCGGAGTTTGCTAAGAATCCCACTTTGATTAAGgtgaagaagc ... tgttctccagTCATACCTCTACCAGATACTCCGTGGCGTTGCGTACTGCCATTCTCATAGA
EST: AGTTCATGGACTCTTGCCCGGAGTTTGCTAAGAATCCCACTTTGATTAAG TCATACCTCTACCAGATACTCCGTGGCGTTGCGTACTGCCATTCTCATAGA
genomic: AGTTCATGGACTCTTGCCCGGAGTTTGCTAAGAATCCCACTTTGATTAAGgtgaagaagc ... tgttctccagTCATACCTCTACCAGATACTCCGTGGCGTTGCGTACTGCCATTCTCATAGA
gaatgaggtgcctgtggatgcattttgaaatgtgactgttttctttgttctccagTCATACCTCTACCAGATACTCCGTGGCGTTGCGTACTGCCATTCTCATAGAGTTCTTCACCGAGATTTGAAACCTCAGAACTTGTTGATAGATCGGCGTA
ctgttttctttgttct CT-rich tract
attttgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatttgcctttcctcatttccattgtatctattaaccagaaaatgaatgaggtgcctgtggatgcattttgaaatgtgactgttttctttgttctccagTCATACCTCTACCAGATACTCCGTGGCGTTGCGTACTGCCATTCTCATAGAGTTCTTCACCGAGATTTGAAACCTCAGAACTTGTTGATAGATCGGCGTA
- - -tgccttt
- - - - - - - - - - - - - - - - - - - - - -atgaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - gtgcctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaaatg