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gtgagtcacagttttctgatagcctttggtcctactccatttcaaatgtttgccatctcacagtgtttttaacctaaaatgttttctgccattttagtggctgaggtgatctttgcaattacatcagcagTCAAGGATGTTTGTGCAAAACCTCCTACCGAGCGCCTCTTCCTTGACAAATACGGGAGGATCTGCTTGTGCCTTGATGAGATTGTTTGGAAG
species | Zea mays |
transcript | GRMZM2G138053_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGATGTCTGCCTCTACATTGTTGGCAAGGATGAATATGATGAGCTTGCTT CEST: gi|58029986|gb|CX725413.1|CX725413
genomic: GGATGTCTGCCTCTACATTGTTGGCAAGGATGAATATGATGAGCTTGCTTgtgagtcaca ... acatcagcag-
EST: GGATGTCTGCCTCTACATTGTTGGCAAGGATGAATATGATGAGCTTGCTT CEST: gi|58029986|gb|CX725413.1|CX725413
genomic: GGATGTCTGCCTCTACATTGTTGGCAAGGATGAATATGATGAGCTTGCTTgtgagtcaca ... acatcagcag-
EST: GGATGTCTGCCTCTACATTGTTGGCAAGGATGAATATGATGAGCTTGCTT CEST: gi|58029986|gb|CX725413.1|CX725413
genomic: GGATGTCTGCCTCTACATTGTTGGCAAGGATGAATATGATGAGCTTGCTTgtgagtcaca ... acatcagcag-
EST: GGATGTCTGCCTCTACATTGTTGGCAAGGATGAATATGATGAGCTTGCTT CEST: gi|4885897|gb|AI677017.1|AI677017
genomic: GGATGTCTGCCTCTACATTGTTGGCAAGGATGAATATGATGAGCTTGCTTgtgagtcaca ... acatcagcag-
EST: GGATGTCTGCCTCTACATTGTTGGCAAGGATGAATATGATGAGCTTGCTT TCAAGGATGTTTGTGCGAAACCTCCTACCGAGCGCCTCTTCCTTGACAAAT
genomic: GGATGTCTGCCTCTACATTGTTGGCAAGGATGAATATGATGAGCTTGCTTgtgagtcaca ... acatcagcagTCAAGGATGTTTGTGCAAAACCTCCTACCGAGCGCCTCTTCCTTGACAAAT
aaaatgttttctgccattttagtggctgaggtgatctttgcaattacatcagcagTCAAGGATGTTTGTGCAAAACCTCCTACCGAGCGCCTCTTCCTTGACAAATACGGGAGGATCTGCTTGTGCCTTGATGAGATTGTTTGGAAG
acctaaa putative branch site (score: 3)
attttagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtcacagttttctgatagcctttggtcctactccatttcaaatgtttgccatctcacagtgtttttaacctaaaatgttttctgccattttagtggctgaggtgatctttgcaattacatcagcagTCAAGGATGTTTGTGCAAAACCTCCTACCGAGCGCCTCTTCCTTGACAAATACGGGAGGATCTGCTTGTGCCTTGATGAGATTGTTTGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG