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...ttgaattcactcagtaaccactatatatccttttgttgcccgtgccctgttttagttgctttttgccattaattttacactctcttctcacccctcccagAGACTCCTTCTCCTGATGAAATTGAGGCATACAAAGTTCTTCAGAAATGCCTTGAGCTGCGTCAGAGGTACATATTCAGAGAAGAAGTTGCTCCTTGGGA
species | Zea mays |
transcript | GRMZM2G134396_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTAAAATCAATATCACAGCTG-TG AGACTCCTTCTCCTGATGAAATTGAGGCATACAAAGTTCTTCAGAAATGCCEST: gi|50336750|gb|CO531876.1|CO531876
genomic: GTAAAATCAATATCACAGCTGTTGgtatgggcca ... cccctcccagAGACTCCTTCTCCTGATGAAATTGAGGCATACAAAGTTCTTCAGAAATGCC
EST: AAAGGAGCCTGAACATGAAACCTTCAGTAAAATCAATATCACAGCTGTTG AGACTCCTTCTCCTGATGAAATTGAGGCATACAAAGTTCTTCAGAAATGCCEST: gi|22490387|gb|BU050310.1|BU050310
genomic: AAAGGAGCCTGAACATGAAACCTTCAGTAAAATCAATATCACAGCTGTTGgtatgggcca ... cccctcccagAGACTCCTTCTCCTGATGAAATTGAGGCATACAAAGTTCTTCAGAAATGCC
EST: GTAAAATCAATATCACAGCTGTTG AGACTCCTTCTCCTGATGAAATTGAGGCATACAAAGTTCTTCAGAAATGCCEST: gi|87153046|gb|DY397835.1|DY397835
genomic: GTAAAATCAATATCACAGCTGTTGgtatgggcca ... cccctcccagAGACTCCTTCTCCTGATGAAATTGAGGCATACAAAGTTCTTCAGAAATGCC
EST: GTAAAATCAATATCACAGCTGTTG AGACTCCTTCTCCTGATGAAATTGAGGCATACAAAGTTCTTCAGAAATGCC
genomic: GTAAAATCAATATCACAGCTGTTGgtatgggcca ... cccctcccagAGACTCCTTCTCCTGATGAAATTGAGGCATACAAAGTTCTTCAGAAATGCC
cctgttttagttgctttttgccattaattttacactctcttctcacccctcccagAGACTCCTTCTCCTGATGAAATTGAGGCATACAAAGTTCTTCAGAAATGCCTTGAGCTGCGTCAGAGGTACATATTCAGAGAAGAAGTTGCTCCTTGGGA
ttctcac putative branch site (score: 2)
ttttacactctcttct CT-rich tract
attaattttacact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgaattcactcagtaaccactatatatccttttgttgcccgtgccctgttttagttgctttttgccattaattttacactctcttctcacccctcccagAGACTCCTTCTCCTGATGAAATTGAGGCATACAAAGTTCTTCAGAAATGCCTTGAGCTGCGTCAGAGGTACATATTCAGAGAAGAAGTTGCTCCTTGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT