1 5' 3' | 2 5' 3' | 3 5' 3' |
...gaaaaacatctatctgaaaaccacaaataatcaatatatatttatttatatgataacatctatatattacgggtgcgtgcgtgcgtgcgtgcatatgcagAACTGGTACTGCTACGCCAAGACGGTGGCGGAGCAGGGCGCGTGGGAGGTGGCGCGGAAGCGAGGGCTGGACCTGGTGGTGGTGAACCCGGTGCTGGTGC
species | Zea mays |
transcript | GRMZM2G131836_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTGTGGACGACACCTGCTGGAGCGACCTCGAGTATTGCAAGAACACCCAG AACTGGTACTGCTACGCCAAGACGGTGGCGGAGCAGGGCGCGTGGGAGGTGEST: gi|74243255|gb|DT651169.1|DT651169
genomic: CTGTGGACGACACCTGCTGGAGCGACCTCGAGTATTGCAAGAACACCCAGgtacgcgtac ... gcatatgcagAACTGGTACTGCTACGCCAAGACGGTGGCGGAGCAGGGCGCGTGGGAGGTG
EST: CTGTGGACGACACCTGCTGGAGCGACCTCGAGTATTGCAAGAACACCCAG AACTGGTACTGCTA
genomic: CTGTGGACGACACCTGCTGGAGCGACCTCGAGTATTGCAAGAACACCCAGgtacgcgtac ... gcatatgcagAACTGGTACTGCTA
ttatatgataacatctatatattacgggtgcgtgcgtgcgtgcgtgcatatgcagAACTGGTACTGCTACGCCAAGACGGTGGCGGAGCAGGGCGCGTGGGAGGTGGCGCGGAAGCGAGGGCTGGACCTGGTGGTGGTGAACCCGGTGCTGGTGC
tgataac putative branch site (score: 2)
ataacatctatatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaaaacatctatctgaaaaccacaaataatcaatatatatttatttatatgataacatctatatattacgggtgcgtgcgtgcgtgcgtgcatatgcagAACTGGTACTGCTACGCCAAGACGGTGGCGGAGCAGGGCGCGTGGGAGGTGGCGCGGAAGCGAGGGCTGGACCTGGTGGTGGTGAACCCGGTGCTGGTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
-aaaaaca
- - - - - - - - - - ccacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcgtgc