1 5' 3' | 2 5' 3' | 3 5' 3' |
...acgagaatctttgattcttgtcctcaatattgccttccttataaagttacttcatatatcatgctccctattctaatattattattctgcaattttgcagTTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAGGCACATGGCACATCAGTTCCGCCCAATACAGCTGTTGTTGTATCCACCT
species | Zea mays |
transcript | GRMZM2G127453_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCCATTTGGACGGGAACTACATTCAATGAAAAAA TTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAGEST: gi|31909649|gb|CD651024.1|CD651024
genomic: GCCATTTGGACGGGAACTACATTCAATGAAAAAAgtgagtcttt ... aattttgcagTTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAG
EST: ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAA TTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAGEST: gi|211042955|gb|FK963033.1|FK963033
genomic: ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAAgtgagtcttt ... aattttgcagTTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAG
EST: ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAA TTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACTAGTAAEST: gi|211042961|gb|FK963039.1|FK963039
genomic: ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAAgtgagtcttt ... aattttgcagTTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAG
EST: ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAA TTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAGEST: gi|113667155|gb|DW831402.1|DW831402
genomic: ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAAgtgagtcttt ... aattttgcagTTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAG
EST: CCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAA TTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAAGTAEST: gi|211167601|gb|FL258650.1|FL258650
genomic: CCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAAgtgagtcttt ... aattttgcagTTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAA-GTA
EST: ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAA TTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGGCAAACAAGTAEST: gi|211245830|gb|FL313150.1|FL313150
genomic: ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAAgtgagtcttt ... aattttgcagTTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGG-CAAACAAGTA
EST: ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAA TTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAGEST: gi|31353639|gb|CD437996.1|CD437996
genomic: ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAAgtgagtcttt ... aattttgcagTTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAG
EST: ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAA TTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAGEST: gi|211042950|gb|FK963028.1|FK963028
genomic: ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAAgtgagtcttt ... aattttgcagTTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAG
EST: ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAA TTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTEST: gi|32870084|gb|CF009766.1|CF009766
genomic: ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAAgtgagtcttt ... aattttgcagTTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGT
EST: AACTACATTCAATGAAAAAA TTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAGEST: gi|211156223|gb|FL476869.1|FL476869
genomic: AACTACATTCAATGAAAAAAgtgagtcttt ... aattttgcagTTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAG
EST: ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAA TTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAGEST: gi|211167597|gb|FL258646.1|FL258646
genomic: ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAAgtgagtcttt ... aattttgcagTTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAG
EST: ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAA TTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAEST: gi|78180798|gb|DV551171.1|DV551171
genomic: ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAAgtgagtcttt ... aattttgcagTTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTA
EST: ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAA TTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAGEST: gi|8665358|gb|BE186174.1|BE186174
genomic: ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAAgtgagtcttt ... aattttgcagTTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAG
EST: ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAA TTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAGEST: gi|211167599|gb|FL258648.1|FL258648
genomic: ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAAgtgagtcttt ... aattttgcagTTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAG
EST: ATATGAAGTTCCTAGATCCATTTGGACGGGAACTACATTCAATGAAAAAA TTCATGGACAAATCGTGCAGTGTTATGGACTCATCTAEST: gi|211045919|gb|FK963047.1|FK963047
genomic: ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAAgtgagtcttt ... aattttgcagTTCATGGACAAATCGTGCAGTGTTATGGACTCATCTA
EST: ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAA TTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAGEST: gi|8401369|gb|BE057003.1|BE057003
genomic: ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAAgtgagtcttt ... aattttgcagTTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAG
EST: ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAA TTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAGEST: gi|5525193|gb|AI861191.1|AI861191
genomic: ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAAgtgagtcttt ... aattttgcagTTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAG
EST: ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAA TTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAGEST: gi|211104453|gb|FL478968.1|FL478968
genomic: ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAAgtgagtcttt ... aattttgcagTTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAG
EST: ATATGAAGTTCCTAGATCCATTTGGACGGGAACTACATTCAATGAAAAAA TTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAGEST: gi|88755570|gb|DY539711.1|DY539711
genomic: ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAAgtgagtcttt ... aattttgcagTTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAG
EST: ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAA TTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAAEST: gi|31909179|gb|CD650789.1|CD650789
genomic: ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAAgtgagtcttt ... aattttgcagTTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAG
EST: ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAA TTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAGEST: gi|211167596|gb|FL258645.1|FL258645
genomic: ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAAgtgagtcttt ... aattttgcagTTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAG
EST: ATATGAAGTTCCTAGATCCATTTGGACGGGAACTACATTCAATGAAAAAA TTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAGEST: gi|166465671|gb|EG323069.1|EG323069
genomic: ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAAgtgagtcttt ... aattttgcagTTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAG
EST: CGGGAACTACATTCAATGAAAAAA TTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAGEST: gi|31360970|gb|CD445327.1|CD445327
genomic: CGGGAACTACATTCAATGAAAAAAgtgagtcttt ... aattttgcagTTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAG
EST: ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAA TTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAG
genomic: ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAAgtgagtcttt ... aattttgcagTTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAG
gttacttcatatatcatgctccctattctaatattattattctgcaattttgcagTTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAGGCACATGGCACATCAGTTCCGCCCAATACAGCTGTTGTTGTATCCACCT
ttctaat putative branch site (score: 470)
tattctaatattatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acgagaatctttgattcttgtcctcaatattgccttccttataaagttacttcatatatcatgctccctattctaatattattattctgcaattttgcagTTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAGGCACATGGCACATCAGTTCCGCCCAATACAGCTGTTGTTGTATCCACCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - -attcttg
- - - - - - - - - - - - - - - tgccttc
- - - - - - - - - - - - - - - - - - - - - - - - - ttcatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attctgc