1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...attcttgtactctatataaactgtttaggggctcaatgcaatacatctaactaattactcaaatctcattctccttcacttaaacgtcactgaactacagGTAGTATGGGGGAGGATTTCGATGGTTGATGCAGAGAAGAGGCTGTTAGCAAATGCATTGGAAGATGTCGATAATCAATTTTTTGTCTTGCTTTCTGACA
species | Zea mays |
transcript | GRMZM2G124151_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTGTACATTCTAGCTCCCTCTTTGTTGGACGTGAAATTCGCAGTGAAAAG GTAGTATGGGGGAGGATTTCGATGEST: gi|149089528|gb|EE178775.2|EE178775
genomic: CTGTACATTCTAGCTCCCTCTTTGTTGGACGTGAAATTCGCAGTGAAAAGgtactctcac ... tgaactacagGTAGTATGGGGGAGGATTTCGATG
EST: CTGTACATTCTAGCTCCCTCTTTGTTGGACGTGAAATTCGCAGTGAAAAG GTAGTATGGGGGAGGATTTCGATGGTTGATGCAGAGAAGAGGCTGTTTAGCEST: gi|71437254|gb|DR818304.1|DR818304
genomic: CTGTACATTCTAGCTCCCTCTTTGTTGGACGTGAAATTCGCAGTGAAAAGgtactctcac ... tgaactacagGTAGTATGGGGGAGGATTTCGATGGTTGATGCAGAGAAGAGGCTGTT-AGC
EST: CTGTACATTCTAGCTCCCTCTTTGTTGGACGTGAAATTCGCAGTGAAAAG GTAGTATGGGGGAGGATTTCGATGGTTGATGCAGAGAAGAGGCTGTTAGCA
genomic: CTGTACATTCTAGCTCCCTCTTTGTTGGACGTGAAATTCGCAGTGAAAAGgtactctcac ... tgaactacagGTAGTATGGGGGAGGATTTCGATGGTTGATGCAGAGAAGAGGCTGTTAGCA
tctaactaattactcaaatctcattctccttcacttaaacgtcactgaactacagGTAGTATGGGGGAGGATTTCGATGGTTGATGCAGAGAAGAGGCTGTTAGCAAATGCATTGGAAGATGTCGATAATCAATTTTTTGTCTTGCTTTCTGACA
aactaat putative branch site (score: 42)
taattact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attcttgtactctatataaactgtttaggggctcaatgcaatacatctaactaattactcaaatctcattctccttcacttaaacgtcactgaactacagGTAGTATGGGGGAGGATTTCGATGGTTGATGCAGAGAAGAGGCTGTTAGCAAATGCATTGGAAGATGTCGATAATCAATTTTTTGTCTTGCTTTCTGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
attcttg
- - - - - - - - - -actgttt
- - - - - - - - - - - - - - - - -caatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - actcaaa