1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgcttggaactaaaatgctttgttgttgtatttttcatcaaataaatgggcgaagtgaacaattgctgaatccttggtttattatttttttgttcaccagGGTAGTAGGCTGGGTATCACGACAGTGGTTTCTACTGATTCCATACGCCATATGATGAGAGGCTTCGCAGATCAAAAACAGAATCCTCTTCTCTATGCCT
species | Zea mays |
transcript | GRMZM2G123544_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCTTGTGTGGGACAAGCGGATGCGGCAAGTCCACTTTATCATCTTTGCTG GGTAGTAGGCTGGGTATCACGACAGTGGTTTCTACTGATTCCATACGCCATEST: gi|31350933|gb|CD435290.1|CD435290
genomic: TCTTGTGTGGGACAAGCGGATGCGGCAAGTCCACTTTATCATCTTTGCTGgtatgtttaa ... tgttcaccagGGTAGTAGGCTGGGTATCACGACAGTGGTTTCTACTGATTCCATACGCCAT
EST: GGACAAGCGGATGCGGCAAGTCCACTTTATCATCTTTGCTG GGTAGTAGGCTGGGTATCACGACAGTGGTTTCTACTGATTCCATACGCCAT
genomic: GGACAAGCGGATGCGGCAAGTCCACTTTATCATCTTTGCTGgtatgtttaa ... tgttcaccagGGTAGTAGGCTGGGTATCACGACAGTGGTTTCTACTGATTCCATACGCCAT
atgggcgaagtgaacaattgctgaatccttggtttattatttttttgttcaccagGGTAGTAGGCTGGGTATCACGACAGTGGTTTCTACTGATTCCATACGCCATATGATGAGAGGCTTCGCAGATCAAAAACAGAATCCTCTTCTCTATGCCT
tttattattttttt CT-rich tract
ttggtttattattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcttggaactaaaatgctttgttgttgtatttttcatcaaataaatgggcgaagtgaacaattgctgaatccttggtttattatttttttgttcaccagGGTAGTAGGCTGGGTATCACGACAGTGGTTTCTACTGATTCCATACGCCATATGATGAGAGGCTTCGCAGATCAAAAACAGAATCCTCTTCTCTATGCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
tgcttgg
- - - - - - -aatgctt
- - - - - - - - - - tgttgtt
- - - - - - - - - - - - - - - - - - - -aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gaacaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgaa