1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...aaatgtttgtagtatccacaacatgtgctgatttgtttccatgttgattttttggtagttgcattttgttttgatcgaacctttccatgtttatttgaagGCAAAAGCTTCAGGAAGAACTCCAGAGGACTATGAAAAAAAGGGTGATTTGACAGGA
species | Zea mays |
transcript | GRMZM2G121427_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAAATTCTTTCAAAGACAAAGCTAAATAGTGGCAGAAATTTATTACACAG GCAAAAGCTTCAGGAAGAACTCCAGAGGACTATGTATATAAAGGGTGATTTEST: gi|20811310|gb|BQ295788.1|BQ295788
genomic: AAAATTCTTTCAAAGACAAAGCTAAAAAGTGGCAGAAATTTATTACACAGgtacttccta ... ttatttgaagGCAAAAGCTTCAGGAAGAACTCCAGAGGACTATG-AAAAAAAGGGTGATTT
EST: AAAATTCTTTCAAAGACAAAGCTAAAAAGTGGCAGAAATTTATTACACAG GCAAAAGCTTCAGGAAGAACTCCAGAGGACTATGNNNNNNNNGGTGATTTG
genomic: AAAATTCTTTCAAAGACAAAGCTAAAAAGTGGCAGAAATTTATTACACAGgtacttccta ... ttatttgaagGCAAAAGCTTCAGGAAGAACTCCAGAGGACTATGAAAAAAAGGGTGATTTG
gattttttggtagttgcattttgttttgatcgaacctttccatgtttatttgaagGCAAAAGCTTCAGGAAGAACTCCAGAGGACTATGAAAAAAAGGGTGATTTGACAGGA
ttttgat putative branch site (score: 11)
tttattt putative PPT
attttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatgtttgtagtatccacaacatgtgctgatttgtttccatgttgattttttggtagttgcattttgttttgatcgaacctttccatgtttatttgaagGCAAAAGCTTCAGGAAGAACTCCAGAGGACTATGAAAAAAAGGGTGATTTGACAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- -tgtttgt
- - - - - - - -ccacaac
- - - - - - - - - - - - -tgctgat
- - - - - - - - - - - - - - - - - - ttccatg
- - - - - - - - - - - - - - - - - - - - -tgttgat
- - - - - - - - - - - - - - - - - - - - - - - - -ttttggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - agttgca